BAC Information

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BAC

Clone NameMSMg01-383N16
Chromosome16 (Build37)
Map Location 68,716,094 - 68,716,586
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383N16.T7 (MSMg01no383_n16.b1)MSMg01-383N16.TJ (MSMg01no383_n16.g1)
ACCAG487427AG487428
length796763
length of high quality
(start - end)
229 (36 - 264)493 (69 - 561)
definitionCHROMAT_FILE: MSMg01no383_n16.b1 PHD_FILE: MSMg01no383_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:00 2005CHROMAT_FILE: MSMg01no383_n16.g1 PHD_FILE: MSMg01no383_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TGATGAATATCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAATATCCT
TAATCATCAAGGAAATGCAAATCAAAACAACCTTGAGATTCTACCTCACA
ACAGTCAGAATTGCTGTGATCAAAAATTCAGGTGACAGCAGATGCTGGCA
AGGATGTGGAGAAAGAGGATGTGGTGGGATTGCAAGCTTGTAAACCACTC
TGGAAGTCAGTCTTTGAGTCCTCAGAAAATTGNACATANTACTACCGGAA
GATCAGCAATACCTCTCCTGGGCATGTACCCAGAAGAAGTTCCNACTGGT
TATTAAAACACCTGTTTCACTATGTTCGTAGCANGCTTATTTATAAAAGC
CAAAAGCTGGAAAGAACCCAAAGTGCCCTTCACCAAAAATGTATACCAAA
AAGGGGAAACTTTTTCCCCTGGGAGAATATCCCCCATTTAAAAAAAGGGG
TTTTTTAAATTTTTGGGAAAAGGGGGTTTCCGGGGAAATATCTCCCCTAA
GGGGTTCCCCCCCCCCCCCGCTTTAAAAAACACCCCCTGGGAAGGGGGTA
TTTCTCCCCCCAAAATAAAAACCCCCCTAAAAATTTTTTTTAACACCCCA
AATATTTTTAAAAGGCGAACCACAAAGGGGGGTGTCCTCCTTCCTCCCCC
CAACAAGAGAGAAAAACTACCCCGTGTGGGGGACAAACAAAAAAAATTTT
TGTTGTTTTAAAAAAAAGGGGGTCTTTTTCTCATACCTCCCCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGTTTGAAGATTTTTGGAGGGTTCACATGT
ATATTTCAATTCATCAGAATTACTTACATTCCCTTATACATTTTCAATTT
TTCTTATCTTTGTTACAAAGTATTTTTTATCTGTTTACATCATTTCTTTA
GGATTAGAAGCCTTCATTCATTTACGCGGAATTTATTTTGAGGATGGTTC
TGGACTTTGTACTTTATCTTTTTATTTTTTTTAATACTATCAAAGGGATC
TTTCTTTTCATACTTCTTAAAGCCACTTCTCACCTTATTTCATTCTTAGC
TATTCTTAGATATTTTAGAGGAATTCCTGTTTTGTATCCTACACATCTAT
CTTCCTGGTTACTGACATTACTTCGTACATTATAGATCAGGATACAGAGA
TGAAGCAGTTTTATAAAACTAGTCTGATGAAGTTCTGAACTAAATGGTGA
ATCAACTCTAGGTTCCTTGTTTTAAGGTTTTGGTGTTGGTATTAAATTTT
CTTTCAGATAATACTTANATTCTAATTGCCCATGGCTATTTTTAGTCTCA
TTATTCCTCAAGAGAAATTGAAAGTGTCTTTGAGTGGGATCCCTGAGGGA
AAAGAATTTGTTTGAGAGTGGTGAAGGTATGGAATAATATAGAAGGTGGC
AGAAAAAATTGAAAGGAGCCTGAATATTTTTTGACAGATTTGTTTAGAGG
GTTTATAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_n16.g1 MSMg01no383_n16.g1 CHROMAT_FILE:
MSMg01no383_n16.g1 PHD_FILE: MSMg01no383_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:00 2005
         (493 letters)



>mm_chr16_68715894_68716786
          Length = 893

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/493 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtttgaagatttttggagggttcacatgtatatttcaattcatcagaattacttaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttagtttgaagatttttggagggttcacatgtatatttcaattcatcagaatgacttaca 260

                                                                       
Query: 61  ttcccttatacattttcaatttttcttatctttgttacaaagtattttttatctgtttac 120
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccttatatatcttcaatttttcttatctttgttacaaagtattttttatctgtttac 320

                                                                       
Query: 121 atcatttctttaggattagaagccttcattcatttacgcggaatttattttgaggatggt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatttctttaggattagaagctttcattcatttacgcggaatttattttgaggatggt 380

                                                                       
Query: 181 tctggactttgtactttatctttttattttttttaatactatcaaagggatctttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggactttgtactttatctttttattttttttaatactatcaaagggatctttctttt 440

                                                                       
Query: 241 catacttcttaaagccacttctcaccttatttcattcttagctattcttagatattttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacttcttaaagccacttctcaccttatttcattcttagctattcttagatattttag 500

                                                                       
Query: 301 aggaattcctgttttgtatcctacacatctatcttcctggttactgacattacttcgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaattcctgttttgtatcctacacatctatcttcctggttactgacattacttcgtac 560

                                                                       
Query: 361 attatagatcaggatacagagatgaagcagttttataaaactagtctgatgaagttctga 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 attatagatcaggatacagagatgaagcacttttataaaactagtctgatgaagttctga 620

                                                                       
Query: 421 actaaatggtgaatcaactctaggttccttgttttaaggttttggtgttggtattaaatt 480
           ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||
Sbjct: 621 actaaatggtgaatcaactctaggttccttgctttaacattttggtgttggtattaaatt 680

                        
Query: 481 ttctttcagataa 493
           |||||||||||||
Sbjct: 681 ttctttcagataa 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)