BAC Information

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BAC

Clone NameMSMg01-384B08
Chromosome16 (Build37)
Map Location 15,557,601 - 15,558,064
singlet/doubletsinglet
Overlap geneUbe2v2
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352
Downstream geneLOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B08.T7 (MSMg01no384_b08.b1)MSMg01-384B08.TJ (MSMg01no384_b08.g1)
ACCAG487603AG487604
length741748
length of high quality
(start - end)
559 (35 - 593)490 (66 - 555)
definitionCHROMAT_FILE: MSMg01no384_b08.b1 PHD_FILE: MSMg01no384_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:18 2005CHROMAT_FILE: MSMg01no384_b08.g1 PHD_FILE: MSMg01no384_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACACC
TTACTCTTACATCATGGAAACACAAACTAAACAGACAAGTGAAACTGCAG
AAGTTATGAACCAAATGGATTTAACAGATATTTATAGAACATTTCATCCT
AAAGCAAAAGAATATTCCTTCTTCTCAGCACCTCATGGTACCCTCTCCCA
AATTGAGCATATAATTGGACACAAAACAGGCCTCAACGGATACAAGAAGA
CTGAAATAATCCTATACATCCTATCAGGTCACCACGGACTACGGCTGGTC
TTAAATACCAACAAAAACAACAGAAAGCACACATACATATGGAAGCTGAA
CAACGCTCAATGATAACTTGGTCAAGGAAAAAATAAAGAAATTAAAGGCT
TTTTAGAATTTAATGAAAATGAAGACAAACATACCAAAACTTATGGGACA
CAATAAGAGCAGTCCACACATGTTGAGAGCCTATGGTGCCGCTTCTAGGA
ATACAGTATTTGTCACTGGGCTAAGACAAGGAAGTAGGCTCAGATAAGAG
TATTAGAAACAGTGACCATGGGGCTTTGTTACTTAATTATTAATTTGTGT
GATCCTTTTGCTTACTTCTTTACTTAATTACTATTTTGTGTGATCTCTTT
ACTACCTCTCTTGATGACTTCATCTTTGATCTTANAACTGAACATGTTTT
TTGGGTATCACAAAAATGAAATAAAGCAAGCTGGGGGAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGCCAGCCAGGAATACCTTGTCTCAAAAACATG
GAGGGAGAGAGATAGGAAAGGAGAGTGGCCAAGAGGGTGGAAACAGGGAG
AGGAAAGGAGACGAAAGGGAGAAGAGAGAGAGAAGAGGAAGCAGGATGGC
GGGTAGGGGGAGAAACTACTAAAGCTAGTAAGATCATAGCATCCATATTT
TTTTTAAAAGCTGCATTTCTATACATTTGCAGTGTATCTAAAATCAATTA
AGAAAATAGGAGTTGCAGAGATGGCTCAGAGGTTAAGAGCACTGTCTCAG
AGGTCCTGAGTTCAATTCCCAGCAACCACCTATAATGAAATCTGGTGCCC
TCTTCTGGCCTGCAGGCACACATGCAGGCAGAATGCTGTATACATAATAA
ATAAATAAATATCTTTTAAATACATATTTTTAAAAATACAATTTGCAATG
ATAATATCAAAATTAATAAGATCTGTGCAACAAAGGCATAAATGAGTATC
CATGGATCAGAAAGTTAATACTTTAAACGTGGCAGTATTCTTCAAGCTGA
TCTATGATAGCACACTTCTGAAATCCTCCGCCCTCCCGAAGAACTAGGGC
TATTTGTTGACCCTTTAAAAACCATTTTTTTGCACTGGCCCCCTTTTTGG
TTTTGTTTTGTTTGGTTCCGCCCCCCCCCCCAACTAGCTCTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b08.g1 MSMg01no384_b08.g1 CHROMAT_FILE:
MSMg01no384_b08.g1 PHD_FILE: MSMg01no384_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:18 2005
         (490 letters)



>mm_chr16_15557401_15558290
          Length = 890

 Score =  843 bits (436), Expect = 0.0
 Identities = 457/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagccaggaataccttgtctcaaaaacatggagggagagagataggaaaggagag 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 201 caggccagccaggaataccttgtctcaaaaacacagagggagagagataggaaaggagag 260

                                                                       
Query: 61  tggccaagagggtggaaacagggagaggaaaggagacgaaagggagaagagagagagaag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tggccaagagggtggaaacagggagaggaaaggagaagaaagggagaagagagagagaag 320

                                                                       
Query: 121 aggaagcaggatggcgggtagggggagaaactactaaagctagtaagatcatagcatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagcaggatggcgggtagggggagaaactactaaagctagtaagatcatagcatcca 380

                                                                       
Query: 181 tattttttttaaaagctgcatttctatacatttgcagtgtatctaaaatcaattaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tattttttttaaaagctgcatttctatacatttgcagtgtatctaaagtcaattaagaaa 440

                                                                       
Query: 241 ataggagttgcagagatggctcagaggttaagagcactgtctcagaggtcctgagttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggagttgcagagatggctcagaggttaagagcactgtctcagaggtcctgagttcaa 500

                                                                       
Query: 301 ttcccagcaaccacctataatgaaatctggtgccctcttctggcctgcaggcacacatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccagcaaccacctataatgaaatctggtgccctcttctggcctgcaggcacacatgc 560

                                                                       
Query: 361 aggcagaatgctgtatacataataaataaataaatatcttttaaatacatatttttaaaa 420
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 aggcagaatgctatatacataataaataaataaatatcttttaaatacgtatttttaaaa 620

                                                       
Query: 421 atacaatttgcaatgataatatcaaaattaataagatctgtgca 464
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 atacaatttgcaatgatagtatcaaaattaataagatctgtgca 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)