BAC Information

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BAC

Clone NameMSMg01-384D22
Chromosome16 (Build37)
Map Location 94,951,751 - 95,088,003
singlet/doubletdoublet
Overlap geneKcnj6
Upstream geneCldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
Downstream geneLOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384D22.T7 (MSMg01no384_d22.b1)MSMg01-384D22.TJ (MSMg01no384_d22.g1)
ACCAG487727AG487728
length759784
length of high quality
(start - end)		362 (34 - 395)401 (61 - 461)
definitionCHROMAT_FILE: MSMg01no384_d22.b1 PHD_FILE: MSMg01no384_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:30 2005CHROMAT_FILE: MSMg01no384_d22.g1 PHD_FILE: MSMg01no384_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,087,646 - 95,088,003)(94,951,751 - 94,952,151)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGGAG
AAATCAGGAAATTAGCAACCTCTAGTGAGAAAGAAGGCAGAGGTTGTACC
CTTCTGTGTGTGAGAGCTGCTGTTTCTGGCTGCTGCTTGAACTTGCTGTA
GGCAGTACGCTCCAGAAAAAAAACTACTCCTCCACCTCTCACACTGGTTT
CAATAGAGTCTTCATGAAAAGCAAACAGAATTCTCTCACATCAGAACTTC
AAGGTTTTGTTTTTAAAGTCTCTTAACTCTAAACACTTAGCAAGGGTTTT
TTGTGAATGTGTAAATTCCAAGAACAATAGCAGGCAAGTTTCCACTCTTT
AGTTTTATAAGGATTATTTTTATTTTGTGTGTAGGAGTGGTTTTGNNNNN
NNNNNNNNNNNTNTNTTNTTTTTTTTTTTTNTTTTTTTTTNNNTTTTNTT
TTTTTTTTTTTNNTTTTTTTTTTTTNNTTTTTNTTTTTTNTTTNNTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNNNNNTTTTTTTTTTTTTT
TNTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTCTTTTTTTT
TTTTNTTTNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTGTGAAAAATCTAAGGCCTTAGCGTCAGCAAACTGCCT
TCTGAGAATCTGGGCAGACGCTTTTGGGGAGGATGCAGGTACCTAAGCGC
AAATCTCTGCTGCCACAGGGGCCTGGCGGTTGAGCTTCATTTTACCTAGA
GCTTGGGACAATCAAGTCATAGAAGACTAGAATCAGGCTGGAGAGATGGC
TCAGCGGTTAAGAGAACCGACTGCTCTTCCAGAGGTCCCAAGTTCAATTC
CCGGCAACCACATAGTGGTTCACAACCATCTGTAATGGGATCTGATGCCT
CTTCCGGTGTGTCTGAAGAGAGCAATGGTGTACTCACATATATAAAATAA
GTATACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGCTGTTGGGA
ATTGAATTTTAGGACCTCTGCTGGCGCTGGTCTTTCCCGCTCGATTTCGA
AAAACTACACTCAATCAGACACCGATCCGTGGCGTTTCAAGATTTATTTT
ATCATCTACCCTTCTTTACCCCGTTCCTTTGACTCCACATCTTCTTCTCA
CCTCATTCTTATTCCCCCTCCCTTTCTTTGTTCGCTTTTTTTTTTTTCTT
CCGTCCCCTTTTTTTTCCGTGTTCTCCTCTTTTTCCTTTTTTTTTGCGTT
TCTCCCCCCTGTTTTTTCACCGTCCTTTTTATATCTACTTTTCTCTCACC
TCCCCCTTTCTCTTTTTTTTGTTGTCTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_d22.b1 MSMg01no384_d22.b1 CHROMAT_FILE:
MSMg01no384_d22.b1 PHD_FILE: MSMg01no384_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:30 2005
         (362 letters)



>mm_chr16_95087442_95088203
          Length = 762

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagggagaaatcaggaaattagcaacctctagtgagaaagaaggcagaggttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaattccagggagaaatcaggaaattagcaacctctagtgagaaagaaggcagaggttgt 503

                                                                       
Query: 65  acccttctgtgtgtgagagctgctgtttctggctgctgcttgaacttgctgtaggcagta 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 acccttctgtgtgtgagagctgctgtttctggctgctgcttgaacttgctgttggcagta 443

                                                                       
Query: 125 cgctccagaaaaaaaactactcctccacctctcacactggtttcaatagagtcttcatga 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 cgctccagaaaaaaaactactcctccacctctcgcactggtttcaatagagtcttcatga 383

                                                                       
Query: 185 aaagcaaacagaattctctcacatcagaacttcaaggttttgtttttaaagtctcttaac 244
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 382 aaagcaaacagaattctctcacatcagaacttcaaggtttcgtttttaaattctcttaac 323

                                                                       
Query: 245 tctaaacacttagcaagggttttttgtgaatgtgtaaattccaagaacaatagcaggcaa 304
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 tctaaacacttaacaagggttttttgtgaatgtgtaaattcaaagaacaatagcaggcaa 263

                                                                     
Query: 305 gtttccactctttagttttataaggattatttttattttgtgtgtaggagtggttttg 362
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttccattctttagttttataaggattatttttattttgtgtgtaggagtggttttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_d22.g1 MSMg01no384_d22.g1 CHROMAT_FILE:
MSMg01no384_d22.g1 PHD_FILE: MSMg01no384_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:30 2005
         (401 letters)



>mm_chr16_94951551_94952351
          Length = 801

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtgaaaaatctaaggccttagcgtcagcaaactgccttctgagaatctgggcagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtgaaaaatctaaggccttagcgtcagcaaactgccttctgagaatctgggcagacg 260

                                                                       
Query: 61  cttttggggaggatgcaggtacctaagcgcaaatctctgctgccacaggggcctggcggt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cttttggggaggatgcaggtacctaagcacaaatctctgctgccacaggggcctggcggt 320

                                                                       
Query: 121 tgagcttcattttacctagagcttgggacaatcaagtcatagaagactagaatcaggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcttcattttacctagagcttgggacaatcaagtcatagaagactagaatcaggctg 380

                                                                       
Query: 181 gagagatggctcagcggttaagagaaccgactgctcttccagaggtcccaagttcaattc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagatggctcagcagttaagagaaccgactgctcttccagaggtcccaagttcaattc 440

                                                                       
Query: 241 ccggcaaccacatagtggttcacaaccatctgtaatgggatctgatgcctcttccggtgt 300
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ccggcaaccacatagtggctcacaaccatctgtaatgggatctgatgcctcttctggtgt 500

                                                                       
Query: 301 gtctgaagagagcaatggtgtactcacatatataaaataagtatactgtagctgtacaga 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 gtctgaagagagcaatggtgtactcacatacataaaataagtatactgtagctgtacaga 560

                                                    
Query: 361 tggttgtgagccttcatgtggctgttgggaattgaatttta 401
           ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tggttgtgagccttcatgtggttgttgggaattgaatttta 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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