Query= MSMg01no384_e18.b1 MSMg01no384_e18.b1 CHROMAT_FILE:
MSMg01no384_e18.b1 PHD_FILE: MSMg01no384_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
(475 letters)
>mm_chr16_30344939_30345813
Length = 875
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 ttaatagaaccactaagtagagaataagctgttttagtatgtgattttagagatatgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatagaaccactaagtagagaataagctgttttagtatgtgattttagagatatgcca 260
Query: 61 tgcaatcacgtttcagttaagctactatatagtcataaactcttgactttcactttttaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaatcacatttcagttaagctactatatagtcataaactcttgactttcactttttaa 320
Query: 121 gaactgtgtttgatgtatatgggtacattgtacagcacttgtgtgtctgatgctgattca 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactgtgtttgatgtatatgggtatattgtacagcacttgtgtgtctgatgctgattca 380
Query: 181 ggttaggagaggtgtgaaatcccctgggactggggttataggtgattctaagccaccacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaggagaggtgtgaaatcccctgggactggggttataggtgattctaagccaccacg 440
Query: 241 tcctgctggggattgaaccctagttctctgcaagcacagctgctactctttaagcactga 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgctggggattgaaccccagttctctgcaagcacagctgctactctttaagcactga 500
Query: 301 atcatcactccggctctcaaagaattgatttttctagaaaaaatgactcagcaattgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatcactccggctctcaaagaattgatttttctagaaaaaatgactcagcaattgaag 560
Query: 361 atgcttgctatttgattgtgatctt-gagattcctatagtggtagaagaaaaccagctcc 419
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcttgctatttgactgtgatctttgagattcctatagtggtagaagaaaaccagctcc 620
Query: 420 caaaagctgtccactgtcctccatgtgtagtccaagacaagtacataagttctgag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaagctgtccactgtcctccatgtgtagtccaagacaagtacataagttctgag 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_e18.g1 MSMg01no384_e18.g1 CHROMAT_FILE:
MSMg01no384_e18.g1 PHD_FILE: MSMg01no384_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
(501 letters)
>mm_chr16_30495677_30496577
Length = 901
Score = 946 bits (489), Expect = 0.0
Identities = 498/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Minus
Query: 1 attgtcactatcttcagacacaccagaagacagcatcaggttccattacagatggctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgtcactatcttcagacacaccagaagacagcatcaggttccattacagatggctgtt 686
Query: 61 gctgggatttgaactcaggacctctggaaaagtagccagtgctcttaaccactgaaccac 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 gctgggatttgaactcagcacctctggaaaagtagccagtgctcttaaccactg-accac 627
Query: 121 aaacacacttttccaaactgtttgcctcaccttcccttgacttgcccagcatcaacctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaacacacttttccaaactgtttgcctcaccttcccttgacttgcccagcatcaacctcc 567
Query: 181 tcctgttctcccataaacacctctatcaaactggcaaatccctttcaaggtcttctcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcctgttctcccataaacacctctatcaaactggcaaatccctttcaaggtcttctcatc 507
Query: 241 ctatacttccctcaaggatcggccattttcactttccagtgaaaagaattgtctatgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctatacttccctcaaggatcggccattttcactttccagtgaaaagaattgtctatgtcc 447
Query: 301 aggagcaggggtgtctcacggttctgttggacaaaacaaaatggccatcaaataagattg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggagcaggggtgtctcacggttctgttggacaaaacaaaatggccatcaaataagattg 387
Query: 361 gcatgcaaggactccaatgcctatgaagtactgttgaaaatacaactctggggctggtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcatgcaaggactccaatgcctatgaagtactgttgaaaatacaactctggggctggtga 327
Query: 421 gatggcattgcttccaagcctaacgacccaaggtccatccttagaacacacatggtggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatggcattgcttccaagcctaacgacccaaggtccatccttagaacacacatggtggca 267
Query: 481 gaaatggactggctcctgtag 501
|||||||||||||||||||||
Sbjct: 266 gaaatggactggctcctgtag 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
