BAC Information

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BAC

Clone NameMSMg01-384F21
Chromosome16 (Build37)
Map Location 61,139,063 - 61,139,584
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384F21.T7 (MSMg01no384_f21.b1)MSMg01-384F21.TJ (MSMg01no384_f21.g1)
ACCAG487821AG487822
length760750
length of high quality
(start - end)
500 (34 - 533)518 (63 - 580)
definitionCHROMAT_FILE: MSMg01no384_f21.b1 PHD_FILE: MSMg01no384_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:39 2005CHROMAT_FILE: MSMg01no384_f21.g1 PHD_FILE: MSMg01no384_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCCTA
GTCACTCCCATTCTCGGGGTGTAATAGTGAGGTGATGGGCAAGCAACGCA
CCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTGCGGGTTA
TAAAAGCAGCGCCATTTTCCCAGTTTGGGATCTTCCTGAGAAGCAAGCAA
TAAAGCTTTTGCCACGGAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGT
CGAGCGGGACGCAATAAGTGGCGCCGAAGAACCCGGGAACTGTCATCACA
CCGGCGCAAGGAAGATCCCTCGTTCGCGGGGCAGAATCAGAACCGTGGGA
CAAAAGGCTCTACAAGGTACGTACAATCTTGAAATTTCTCCAGAGTTAGA
AGCCCTTTTGATTGTTTGCACGGAGATTATGAGGATTGTCAGCAAATGGT
AGAAGTGGGGCAGAAAGTTCTGGACAAAATTCAAGAAAGTCTATCAGAGG
TAGAGCGGGGAGAGAAAGTAAAAGTAGAGAGGAAACAAAGTGCACTGAAG
AATTTAGGCCTTTCCACGGGCCTTGAGCCCGAGGAAAAGAAAATAAAGGA
AAGAATGCCCTGGGAGAGATANAAAAAAAGAATGGAAGGGAGAGAAGAAG
GAGAATCAACCTGGAAAAGCCCTAAGGAAAGGAGCCCTTCCCCCCCCGGG
GGAATTAAGGCGGTAATTCTTATAACCCCAACCCCATGGAGGTGTAATAC
CCCTGAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATTTATGTACCTAGAGTTCACCCTTGATATTAACTTTA
AAAGTAATAATGTAAATATATGTGTTATTTTTATACTCATATACTGGTCT
TAAATGAGCTTCAGTTAATTGTTTTTGATCATTGGATTGACAAAGAAAAA
ATAACTAAGAAAGCAAAAATTGTTAAAATTAAAAGAATATAGGCATATTG
CATGTGCTGTATGTTCAGTTACTTGTATCTCAGGAATTAAAATTTAAATG
CATGAGTTTAAATTTGGAATAATAATCCAATACCCATGCAGTGCTCTTGT
GTAGTAATTCAATTTCTCCAATAATAAACCATTAAGTGTTTAGAACTGCC
ATTTTGATAATGCCATGCATTGAACAAAGTTGAAACATGCATAACTTTAA
AAAAAAATCAAACTTGTTTTCTAGTAAGAACTGTGACTTGTACACAACTT
ATTTAGAAAAAAAATAGTTCAAGAGTAAAAACTAGTTTATTATAAAAGGA
GACAAAGTGTATAAGAGGTTCTGCAGGGATAGAAACCTTCATAGGATCTT
CAGTTTCCTAGAATAAGCCCTTGAGTATGCCTGAGAGGGAACATTTTAAT
TGGGTTACAATTTGGGAACCTCCATGAAAAACTTTTTTATTAAATTAATT
AAAGAGAAAAAATTGCTTGGCTTTAAAATAACACAGCACCAAAACCTCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_f21.g1 MSMg01no384_f21.g1 CHROMAT_FILE:
MSMg01no384_f21.g1 PHD_FILE: MSMg01no384_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:39 2005
         (518 letters)



>mm_chr16_61138863_61139784
          Length = 922

 Score =  936 bits (484), Expect = 0.0
 Identities = 511/522 (97%), Gaps = 4/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatgtacctagagttcacccttgatattaactttaaaagtaataatgtaaatatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttatgtacctagagttcacccttgatattaactttaaaagtaataatgtaaatatatg 260

                                                                       
Query: 61  tgttatttttatactcatatactggtcttaaatgagcttcagttaattgtttttgatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgttatttttatactcatatactggtcttaaatgagcttcagttaattgcttttgatcat 320

                                                                       
Query: 121 tggattgacaaagaaaaaataactaagaaagcaaaaattgttaaaattaaaagaatatag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tggattgacaaagaaaaaataactaagaaagcaaaaattgttaaaattaaaagactatag 380

                                                                       
Query: 181 gcatattgcatgtgctgtatgttcagttacttgtatctcaggaattaaaatttaaatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatattgcatgtgctgtatgttcagttacttgtatctcaggaattaaaatttaaatgca 440

                                                                       
Query: 241 tgagtttaaatttggaataataatccaatacccatgcagtgctcttgtgtagtaattcaa 300
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgagtttaaatttagaataataatccaatacccaggcagtgctcttgtgtagtaattcaa 500

                                                                       
Query: 301 tttctccaataataaaccattaagtgtttagaactgccattttgataatgccatgcattg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tttctccaataataaaccattaagtgtttagaactgccattttgctaatgccatgcattg 560

                                                                       
Query: 361 aacaaagttgaaacatgcataactttaaaaaaaaa----tcaaacttgttttctagtaag 416
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 561 aacaaagttgaaacatgcataactttaaaaaaaaaaaaatcaaacttgttttctagtaag 620

                                                                       
Query: 417 aactgtgacttgtacacaacttatttagaaaaaaaatagttcaagagtaaaaactagttt 476
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 621 aactgtgacttgtacacaacttatttagaaaaaaaatagctcaagagtaaaaactagttc 680

                                                     
Query: 477 attataaaaggagacaaagtgtataagaggttctgcagggat 518
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attataaaaggagacaaagtgtataagaggttctgcagggat 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 922
Length adjustment: 10
Effective length of query: 508
Effective length of database: 912
Effective search space:   463296
Effective search space used:   463296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)