Query= MSMg01no385_j02.b1 MSMg01no385_j02.b1 CHROMAT_FILE:
MSMg01no385_j02.b1 PHD_FILE: MSMg01no385_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:10 2005
(523 letters)
>mm_chr16_12050228_12051150
Length = 923
Score = 922 bits (477), Expect = 0.0
Identities = 504/513 (98%)
Strand = Plus / Minus
Query: 11 gaattctgaccgtgaataataagtcagaaagcagactgcatccttgcagctggctggcca 70
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 723 gaattctgactgtgaagaataagtcagaaagcagattgcatccttgcagctggctggcca 664
Query: 71 tcactccagggagaacagtgctgtgtgtgtgcagctaagccctgctgtccagtctctacc 130
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcactccagggagaacagtgctatgtgtgtgcagctaagccctgctgtccagtctctacc 604
Query: 131 agggataaatgagggcagatacagatgctagactcactggtcagccagtgtgaggagctc 190
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 603 agggataaatcagggcagatacagattctagactgactggtcagccagtgtgaggaactc 544
Query: 191 tgccttcttgtactcattcctctttttctgaggtcactaggactgattgacaagtccact 250
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgccttcttgtactcattcctttttttctgaggtcactaggactgattgacaagtccact 484
Query: 251 ctaaccgtctacactgacaccatcacagaagtctaatctcttcatagcacaatgagcact 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctaaccgtctacactgacaccatcacagaagtctaatctcttcatagcacaatgagcact 424
Query: 311 cagccaaaactagctctcagccccagaccggaagatatttgaggagtctaacctttctaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagccaaaactagctctcagccccagaccggaagatatttgaggagtctaacctttctaa 364
Query: 371 gaaaaacagcacagcagatgacagagtctagcaacagcaaaaacattagatcagatggac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaaaaacagcacagcagatgacagagtctagcaacagcaaaaacattagatcagatggac 304
Query: 431 ttaaaatagacaattattcttttagtgaagactttaaaagtaatgactgaacaatataaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttaaaatagacaattattcttttagtgaagactttaaaagtaatgactgaacaatataaa 244
Query: 491 ctaaggagtttcaaagaaacgagtttaaacatt 523
|||||||||||||||||||||||||||||||||
Sbjct: 243 ctaaggagtttcaaagaaacgagtttaaacatt 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_j02.g1 MSMg01no385_j02.g1 CHROMAT_FILE:
MSMg01no385_j02.g1 PHD_FILE: MSMg01no385_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:10 2005
(480 letters)
>mm_chr16_11858463_11859343
Length = 881
Score = 868 bits (449), Expect = 0.0
Identities = 473/481 (98%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 1 aaatgcaggctatgcattgcccatgcctccaaaagctcaaaacagttttctctctgcaca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgcaggctacgcattgcccatgcctccaaaagctcaaaacagttttctctctgcaca 260
Query: 61 tcagcttccatttatgaaaccaaacacaaagggagtgtcgtggaacttagacattatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagcttccatttatgaaaccaaacacaaagggagtgtcgtggaacttagacattatcta 320
Query: 121 aaaccatcactgctcttgaagagtgtctattacaagaacatcagattagccagg-tgtgg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaaccatcactgctcttgaagagtgtctattacaagaacatcagattagccaggttgtgg 380
Query: 180 tgaacagcattctttggctcttttcaagtctcttccatgctagctgactgaaagaagcct 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcagcattctttggctcttttcaagtctcttccatgctagctgactgaaagaagcct 440
Query: 240 gaagctgactgtgttcagggtttaatgagcatctgagcttggtagagaacattcctgctg 299
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 441 gaagccgactgtgttcagggtttaatgagcgtttgagcttgatagagaacattcctgctg 500
Query: 300 tctgttaccacgcaagacaaactctactggatcctgacagctcctacttcatccttacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgttaccacgcaagacaaactctactggatcctgacagctcctacttcatccttacta 560
Query: 360 actaactgccttctgttctcaaagctgcagtcagactggggaataagtcagtctgggtca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actaactgccttctgttctcaaagctgcagtcagactggggaataagtcagtctgggtca 620
Query: 420 gttctgagcacactggatttattaaactcagtcacttgaggctaccccaccaggtaaaca 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gttctgagcacactggatttattaaactcagccacttgaggctaccccaccaggtaaaca 680
Query: 480 a 480
|
Sbjct: 681 a 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 881
Length adjustment: 10
Effective length of query: 470
Effective length of database: 871
Effective search space: 409370
Effective search space used: 409370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
