BAC Information

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BAC

Clone NameMSMg01-385J12
Chromosome16 (Build37)
Map Location 7,933,070 - 7,933,577
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385J12.T7 (MSMg01no385_j12.b1)MSMg01-385J12.TJ (MSMg01no385_j12.g1)
ACCAG488758AG488759
length763758
length of high quality
(start - end)		549 (27 - 575)508 (56 - 563)
definitionCHROMAT_FILE: MSMg01no385_j12.b1 PHD_FILE: MSMg01no385_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:12 2005CHROMAT_FILE: MSMg01no385_j12.g1 PHD_FILE: MSMg01no385_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAGGAATA
CCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCCTCG
GAGAAATGCAAATCAAAACAACCCTAAGATTCCATCTCACACCAGTCAGA
ATAGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGTAAGCTTGTACAAC
CACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTTC
AACTGGTAAGAAGGACACATGCTCCGCTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGGAGCTGGAAAGAACCAAGATGCCCCTTAATAGAGGAATGG
ATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAAGGCA
TCATCCTGAGTGAGGTAACAGAATCACAAAAGAACTCAAATGATATGTAC
TCACTGATAAGTGGATATTAGCTCAGAAACTTAGTATACCCGAGATATAA
GATTCTATTTGTAAAACACATGAACTTTGAGAAGAACGAAGACCAAAGTG
TGGACACTTTGCCCCTTCTTAAAATTGGGAACAAACCCCCTTGGAAGGAG
TTTTTCAGACCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTAGAAGAATTTAACATAGTCTGTGTACTTAATGTGATTGGGCT
AAAGTTACATTGACCTCAGAAAATGAAATCCAAAACGTATAAAGTTTTCT
AATAAACATTTTTGTATTTGTTGAACCAAAGAATAATAAAAGTAATTAGA
ACAATCAGAGCTTGTGAATTAAATCTGACATTTAATTTCATTTTTATAGC
AATGTACTTTTAATAATCTTGGCCAATGGACACACATACAAAAATATCTA
AGAAAGCAAGTCCGTTACTGTTTCTTTATTCCCTGACAAACACAGTATTT
GGATAGGAGAGATTTGTCCCTACGGTGAGGTAAGACTGAGGTATACATGC
CCGAGGAACTTGTGGAACTGCTTAGCACAGTTTCAGATTCATACTACATG
GTCAATAGAAATTCTTTTTTTCTATTATAATCTCAGAAAATAAAAAAATA
ATTAAAAAAATCTTTGCTACCATAATTGCATGGTTATTGCAATACATACC
ATGGTTGGTAGTCATTTTGTGCACAGAAATTTGACTAGTACATTTGCATG
TGAGAAAGGTGAAAAGTGTGATTAAATTGCACAGTCCTTGCCTCTGTGAT
ATTTGCTTCCCCATCCGTAAAAATCTGAATGCATATTTGCATGCATGCCT
GTATTTTGTTTGGCACCAAGGCCTCCGCAATAAAATTTTTCTCCCCTTTC
CTGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_j12.g1 MSMg01no385_j12.g1 CHROMAT_FILE:
MSMg01no385_j12.g1 PHD_FILE: MSMg01no385_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:12 2005
         (508 letters)



>mm_chr16_7932947_7933854
          Length = 908

 Score =  982 bits (508), Expect = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagaagaatttaacatagtctgtgtacttaatgtgattgggctaaagttacattgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtagaagaatttaacatagtctgtgtacttaatgtgattgggctaaagttacattgacc 572

                                                                       
Query: 61  tcagaaaatgaaatccaaaacgtataaagttttctaataaacatttttgtatttgttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcagaaaatgaaatccaaaacgtataaagttttctaataaacatttttgtatttgttgaa 512

                                                                       
Query: 121 ccaaagaataataaaagtaattagaacaatcagagcttgtgaattaaatctgacatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccaaagaataataaaagtaattagaacaatcagagcttgtgaattaaatctgacatttaa 452

                                                                       
Query: 181 tttcatttttatagcaatgtacttttaataatcttggccaatggacacacatacaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttcatttttatagcaatgtacttttaataatcttggccaatggacacacatacaaaaat 392

                                                                       
Query: 241 atctaagaaagcaagtccgttactgtttctttattccctgacaaacacagtatttggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atctaagaaagcaagtccgttactgtttctttattccctgacaaacacagtatttggata 332

                                                                       
Query: 301 ggagagatttgtccctacggtgaggtaagactgaggtatacatgcccgaggaacttgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggagagatttgtccctacggtgaggtaagactgaggtatacatgcccgaggaacttgtgg 272

                                                                       
Query: 361 aactgcttagcacagtttcagattcatactacatggtcaatagaaattctttttttctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aactgcttagcacagtttcagattcatactacatggtcaatagaaattctttttttctat 212

                                                                       
Query: 421 tataatctcagaaaataaaaaaataattaaaaaaatctttgctaccataattgcatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tataatctcagaaaataaaaaaataattaaaaaaatctttgctaccataattgcatggtt 152

                                       
Query: 481 attgcaatacataccatggttggtagtc 508
           ||||||||||||||||||||||||||||
Sbjct: 151 attgcaatacataccatggttggtagtc 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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