Query= MSMg01no386_n03.b1 MSMg01no386_n03.b1 CHROMAT_FILE:
MSMg01no386_n03.b1 PHD_FILE: MSMg01no386_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:42 2005
(523 letters)
>mm_chr16_12220678_12221600
Length = 923
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Minus
Query: 28 tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacttc 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacttc 864
Query: 88 acacaagtctgaatagctaagatcaaaaactcaggtgacagcagatgctggtgaggatgt 147
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 acaccagtctgaatggctaagatcaaaaactcaggtgacagcagatgctggtgaggatgt 804
Query: 148 ggagaaagaggaacactcctccattgctggtggtattgcaagctggtacaaccactctgg 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 803 ggagaaagaggaacactcctccattgctggtggtattgcaagctggtacaaccactctag 744
Query: 208 aaatcagtctggtggttgctggttaatgttttcaagctcttcagttcatccattactagg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaatcagtctggtggttgctggttaatgttttcaagctcttcagttcatccattactagg 684
Query: 268 aaacctacattgcccaccccacgctggtttaggtgccctattgttttgccctagcaatga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaacctacattgcccaccccacgctggtttaggtgccctattgttttgccctagcaatga 624
Query: 328 ttagcccaagttttccttgacactggatatatttatcagattcttatcataatggctaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttagcccaagttttccttgacactggatatatttatcagattcttatcataatggctaga 564
Query: 388 cttgtctttagaccatgatctcctaatcttagtaaaactaatatcttgggggtatgtgac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttgtctttagaccatgatctcctaatcttagtaaaactaatatcttgggggtatgtgac 504
Query: 448 acttggcaggagggagtaaaaggttgtgctacacactgcagtgtcttgtagcattccttt 507
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 acttggcaggagggagtaaaaggctgtgctacacactgcagtgtcttgtagcattccttt 444
Query: 508 cctctgcccaccagat 523
||||||||||||||||
Sbjct: 443 cctctgcccaccagat 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_n03.g1 MSMg01no386_n03.g1 CHROMAT_FILE:
MSMg01no386_n03.g1 PHD_FILE: MSMg01no386_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:42 2005
(482 letters)
>mm_chr16_12058205_12059086
Length = 882
Score = 859 bits (444), Expect = 0.0
Identities = 471/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 1 cttcttttcatattcttatttgggaatttcttctctaggagagatgtatgcatgtaaagt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 200 cttcttttcatattcttatttgggaatttcttctctaggagagatatatgcatgtaaagt 259
Query: 61 ctgtctacctctccttacagtttcccactggggaactggagtacagttttacctaagttc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgactacctctccttacagtttcccactggggaactggagtacagttttacctaagttc 319
Query: 121 ctgctgggaaattgctga-aaaatgctgagaggagcttgttggactgactttcatatctt 179
|||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||
Sbjct: 320 ctgctgggaaattgctgagaaactgttgagaggagcttgttggactgactttcagatctt 379
Query: 180 gagtgaggggttgctcacaggagcatggctgaccccaaagcagctgcaatggaaattttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtgaggggttgctcacaggagcatggctgaccccaaagcagctgcaatggaaattttt 439
Query: 240 acccagcatggatggtggtatccccataactgcctatcagctaacctccctaagctaacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acccagcatggatggtggtatccccataactgcctatcagctaacctccctaagctaacc 499
Query: 300 tcctcagcctagattccctttccccagcagagacccaaggccaagtgcagttagggcaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctcagcctagattccctttccccagcagagacccaaggccaagtgcagttagggcaga 559
Query: 360 gttgctataactggtttgggaaatgatctggagtttcaggagaggggccagtgactctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttgctataactggtttgggaaatgatctggagtttcaggagaggggccagtgactctcc 619
Query: 420 acgcctgctcttctgtcaggaaatatcaacagcacccagagcttactttgctggtccctt 479
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 acgcctgctcttctataaggaaatatcaacagcacccagagcttattttgctggtccctt 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
