BAC Information

Click to search

BAC

Clone NameMSMg01-387I06
Chromosome16 (Build37)
Map Location 27,369,654 - 27,369,997
singlet/doubletsinglet
Overlap geneUts2d
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606, Ostn
Downstream geneCcdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I06.T7 (MSMg01no387_i06.b1)MSMg01-387I06.TJ (MSMg01no387_i06.g1)
ACCAG490230AG490231
length751766
length of high quality
(start - end)
437 (46 - 482)340 (83 - 422)
definitionCHROMAT_FILE: MSMg01no387_i06.b1 PHD_FILE: MSMg01no387_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:35 2005CHROMAT_FILE: MSMg01no387_i06.g1 PHD_FILE: MSMg01no387_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCATTTTTAACAGCTGAGTAGTACTCCAATTATGTAAATGTACCAC
ATTCTCTGTATTCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCCATCT
GCTGGCTATTGTAAATAAGGCTGATATGATCATGTGTGGAGCATGTGTCC
TTATTACATGTAGGAGCATCTTCTGGGTCCTCAGGTAGTGTTATGTTCAA
TTTTCTGAGGAACTGCCAAATGATTTCCATAGTGGTTGTACCAGCTTGTG
ATCCCACCAGCTATTTTTAATATAGGAATGTTCCTCTTTCTCCACATCCT
CACCAGCATCTGCTGTTATCTGAGTTTTTGATCTTAGCCATTTTGACTGG
TGTGAGGTGGAATCTCACGGTTGTTTTGATTTGCAGTTTCCTAATGACTA
AGGATGTTGAACATTTTTTTTTTTTTTTGGTTCTTCTCAGCCATTCGCTA
TTCCTCAGTTGAGAATTCTTTGCTTTAGTCACCAACCCCCTCTTAATAGG
GCTATTAAGTTCTCTGGACCCTACCTCCTTGCACCCCTTGCCAACCTGCA
TCACCCCCCCCCCTCGAACCCCCATTTGTCCTTCTTTTTCCCCTCGCCCC
TCCCCCCCCCCCAGATCCCCCCCCCCACTCACAAACTTTTATTCGCCTCC
CCATCCCCATCACTTCTTCTTATTTCCCCCCCCCCCCCCTCTCCCCCCCC
G
NCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTAAGTAGCCGCTGC
TCTGAATTGAGGGTAGTCCCTGGGGCTTTTTTTTTTTTCTGAAAAGTTGT
GCCAAATTGTCCAATATAAGACCACATTAACTTCAGCTATGTTTTTCCTA
GTAATGAGTATTTATTTTACAATTTTCCCTAGATGGTTAGAGATTTGAAA
TGTAGAACAAGCTATAGAGTCAGTCTTATTTCCGGAGTATCCTGGAGAAA
GGACAGGGCTTCTGTCAAAGGAGATTATTTGTTTGATGTCCGTGAAAGGA
CCATTTTAGGGAAAAGTAGAAAATAACAATGTGCTTGCAGAGCTGTGGAC
AGCAAACCTGATGGGCTGGCAGTGAGCGCCGACCCTGGGGTTAGATATTT
ATATTTCTTATATGCTTGATGCCAGAGTTAACAACAATCCGCAATACTTT
AGACCGGCTACATGTTTTACCAAAATTTGGTTCCGGTTGCCTTCCTCCTC
TTTACCTCTCCTTCCTTCTAGCCCCGTGTTTTAACCTTTTTTCTCCCTTT
CGTTCTCCCGCCTGTCTTATCTCTTGTGCTCTCTCCCTGTATTTCTCTTA
ATTTCGTTCACAAGAAATATTCTGTGCCCTTTTCCATACCTGCCAGTTTT
CTCTACACACTCTTCATCTCCTCTCTCCATGTTATTATCCCTACCCACAT
TTTCCTTCCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i06.g1 MSMg01no387_i06.g1 CHROMAT_FILE:
MSMg01no387_i06.g1 PHD_FILE: MSMg01no387_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:35 2005
         (340 letters)



>mm_chr16_27369454_27370197
          Length = 744

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/345 (97%), Gaps = 6/345 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttaagtagccgctgctctgaattgagggtagtccctggggc----tttttttttttt 56
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 544 tccttaagtagccgctgctctgaattgagggtagtccctggggctttttttttttttttt 485

                                                                       
Query: 57  ctgaaaagttgtgccaaattgtccaatataagaccacattaacttcagctatgtttttcc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgaaaagttgtgccaaattgtccaatataagaccacattaacttcagctatgtttttcc 425

                                                                       
Query: 117 tagtaatgagtatttattttacaattt-tccctagatggttagagatttgaaatgtagaa 175
           |||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 424 tagtcatgagtatttattttacaatttgt-cctagatggttagagatttgaaatgtagaa 366

                                                                       
Query: 176 caagctatagagtcagtcttatttccggagtatcctggagaaaggacagggcttctgtca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caagctatagagtcagtcttatttccggagtatcctggagaaaggacagggcttctgtca 306

                                                                       
Query: 236 aaggagattatttgtttgatgtccgtgaaaggaccattttagggaaaagtagaaaataac 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaggagattatttgtttgatgtccgtgaaaggaccattttagggaaaagtagaaaataac 246

                                                        
Query: 296 aatgtgcttgcagagctgtggacagcaaacctgatgggctggcag 340
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aatgtgcttgcagagctgtggacagcaaacctgatgggctggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 744
Length adjustment: 9
Effective length of query: 331
Effective length of database: 735
Effective search space:   243285
Effective search space used:   243285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)