BAC Information

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BAC

Clone NameMSMg01-387M15
Chromosome16 (Build37)
Map Location 42,327,456 - 42,327,930
singlet/doubletsinglet
Overlap geneGap43
Upstream geneEG667450, Lsamp
Downstream geneBC002163, LOC667484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387M15.T7 (MSMg01no387_m15.b1)MSMg01-387M15.TJ (MSMg01no387_m15.g1)
ACCAG490440AG490441
length791772
length of high quality
(start - end)
347 (109 - 455)491 (77 - 567)
definitionCHROMAT_FILE: MSMg01no387_m15.b1 PHD_FILE: MSMg01no387_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:57 2005CHROMAT_FILE: MSMg01no387_m15.g1 PHD_FILE: MSMg01no387_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAA
TGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACCACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGAC
TCTAACTAAGGAAGCGAAAGATCTGTATGATAAAAACTTCCAGTATCTGA
AGAAAGAAATTAACGAAGATCTCCCAAGATGGACAGATCTCCCCTGCTCC
TGGATTGGCACGACCCATACCCGTAACCATGGGTTACCTTGCCCCCAACC
GATCCTCCAGATTTCCCGGCGCTCCCCCTCCCAAATTTCCACTCCCTACC
CCCCCCTCGAACTCACAATAGGAGTCCCCTCCCTACCCCCCCTTTCCCCT
ATACCTCCTTACCCCCCTTGGTACCCCCCAAATTCCCCCTN
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGAATTGAAGAAGGGAAAC
TAAAAGGGAGACTATATTTTTTGGTTTCTACCATCAATGACTGCAGTTGA
GATGACCACAGAAGGACAGGGTGAATGAAAACAGCTTGGGGATAGGAAAG
GGAGCAAATGGGGGGCAGAATTTTATCTTTCTATCCTTTCCTTCCTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTGTCTCTCTTTTTTTCTT
TCTTTCTTTCCATCTGTCTGTCTATTCATTCATTAATTTATTTACTGCTG
TTTTCATAAACTAGTAATACCCTCAAACATTTGATAATAGGAGAGACTAG
ACTGTCTAATTTATTAATTACCTGACTAGATGAGAAAATGGTTTAATTAA
GATATCAAGGCCTATTTCCAAGGGACAGTTAATAAGCAAACCTCTAGAAT
GTAACCTCTGGAGAGCCCGAGAATTCTCCGGGCTGAAACTCACAGATCCA
CATGAGAGGGGGGGGCATGGATGACATCACTCATGGGCCCTGCATAATGT
CATATAAATGGCAAAAACTTAATAACCATTGTTTTCACGACTGGTTTAAA
AACAACGCCCAATAAACCCCCCACACTCTGGTCGGAGGAGGGGCCCCCCT
TACTCACGCGACCAATCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_m15.g1 MSMg01no387_m15.g1 CHROMAT_FILE:
MSMg01no387_m15.g1 PHD_FILE: MSMg01no387_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:57 2005
         (491 letters)



>mm_chr16_42327256_42328146
          Length = 891

 Score =  872 bits (451), Expect = 0.0
 Identities = 474/491 (96%), Gaps = 16/491 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgagaattgaagaagggaaactaaaagggagactatattttttggtttctaccatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgagaattgaagaagggaaactaaaagggagactatattttttggtttctaccatca 260

                                                                       
Query: 61  atgactgcagttgagatgaccacagaaggacagggtgaatgaaaacagcttggggatagg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atgactgcagttgagatgaccacaggaggacagggtgaatgaaaacagcttggggatagg 320

                                                                       
Query: 121 aaagggagcaaatggggggcagaattttatctttctatcctttccttccttctttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 321 aaagggagcaaatggggggcagaattttatctttctatcctttccttccttc-------- 372

                                                                       
Query: 181 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttc 240
                  | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 -------c-ttctttctttctttctttctttctttctttctttctttctttctttctttc 424

                                                                       
Query: 241 tttctttctttctctctgtctctctttttttctttctttctttccatctgtctgtctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttctttctttctctctgtctctctttttttctttctttctttccatctgtctgtctatt 484

                                                                       
Query: 301 cattcattaatttatttactgctgttttcataaactagtaataccctcaaacatttgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cattcattaatttatttactgctgttttcataaactagtaataccctcaaacatttgata 544

                                                                       
Query: 361 ataggagagactagactgtctaatttattaattacctgactagatgagaaaatggtttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ataggagagactagactgtctaatttattaattacctgactagatgagaaaatggtttaa 604

                                                                       
Query: 421 ttaagatatcaaggcctatttccaagggacagttaataagcaaacctctagaatgtaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttaagatatcaaggcctatttccaagggacagttaataagcaaacctctagaatgtaacc 664

                      
Query: 481 tctggagagcc 491
           |||||||||||
Sbjct: 665 tctggagagcc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)