BAC Information

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BAC

Clone NameMSMg01-387N04
Chromosome16 (Build37)
Map Location 55,943,350 - 55,943,758
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667927, LOC436421, Zpld1, Nfkbiz, Gm1752, Lrriq2, EG667966
Downstream geneLOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387N04.T7 (MSMg01no387_n04.b1)MSMg01-387N04.TJ (MSMg01no387_n04.g1)
ACCAG490465AG490466
length758761
length of high quality
(start - end)
403 (77 - 479)442 (83 - 524)
definitionCHROMAT_FILE: MSMg01no387_n04.b1 PHD_FILE: MSMg01no387_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:59 2005CHROMAT_FILE: MSMg01no387_n04.g1 PHD_FILE: MSMg01no387_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCAATTCTTTCAGAAATTACAGGACTTAATTTTTAGGG
AAGAAGGCAATTTTAGTTAAAAGGTTTGATTGTAGATGGAAAATTGGTGC
CTGAAACACTTGATCATATGGGAACAGCTAGCCTTTGTGCCCACTCCTCA
GTGACTCAGGACAGATGAATCAAACAAAACTCTCTTCCAGCTACTATTGT
AAACTTGGAAGAGTCTGCGCTCCTGGAGTACCTTCAGCCGCTAATATTTG
GGACTCTCCTTTCTAAATAAATAGGAGAGATCTGGAGCCCCCTTCCTCCT
CCATGAACTAATTTCTCCACAATCCTCACAGTACGAAAGAGCTGTCAGCG
CTGTCCGAATGAAAATGGAGTGCCCTGGGAGGATCCTTATAATGACAAAA
ATAAATCATGGGCTGGAAAGATGGTTGCCCAATGGTAAACTGCTTGCCCA
TGATGTTAACGCCTTGGTGCGATCACCACCACCACAGGAAAACCAACCAA
CTATACAACCTCCCACCCGCGCGATAACCACGCCAACCCAACAACCCCCC
TTCCCTTCCCCCTTATTATACCCGAATGTCCCCTTACCCACGGCCCCACC
AGGCTGGCTTAACCGCATAACCTACCCTTTGAAAACCAAGAACCCTCCGC
GCATCCCAATTCCTCTCTTTTAATTTTTCCCCCCCCCCCTGTCGCTCAAT
CCTCCCCG
CCCTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTACCAGACAACACACA
ACCCCCCACACCCTCCTGAAAACCAGTAAGGGCGATAGAAACCGAGGAAC
AAAACACCCACCCAGAAAAGACAAGACCAGATATCAGCACCAAGAATTCA
ATCTTCCCAAAGACAAGTGCCTAGTTGTCAGCATAAAAGCAAAATCAATA
ACAGCCAGGCAACATGTCTCCACTTGAGCCCAGCAAGCCCACCACAGAAG
GCCCTGAGAGCTGCAACTTATCTGACGCACAAGACAGAGACATTAAAGCA
GTCTTTGTGCATGTGATAGAGGTCCTTACAGAGGGCATTGGTAAATTGCA
AAGCTTCTGCAAGGCAAAAGACACCGCCAATAAGACCAAAAGGCCACCAA
CAAATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATA
TCCAATATATATAACGAACTCACGAAGGTGGACTCCCGAAAATAAATAAA
TAAATAAAATAAAAATTACCATAAGAAGGTGGACTTCCCACAATCAAATA
ACCCCCTTAAAAAATGGGGTTCAGAGCTAACCACAGAATTCTCACCTGAG
AAATACCAAATGGCCGGAAAAGCTCCTGAATAAATGGTCAGCATTCCTTT
ATCCTCCAACGAAGTGGGAATTCTAACAAACCTTGAGATTTTCTTTTTCT
TCCATCTCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_n04.b1 MSMg01no387_n04.b1 CHROMAT_FILE:
MSMg01no387_n04.b1 PHD_FILE: MSMg01no387_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:59 2005
         (403 letters)



>mm_chr16_55943253_55944055
          Length = 803

 Score =  721 bits (373), Expect = 0.0
 Identities = 395/409 (96%), Gaps = 11/409 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattacaggacttaatttttagggaagaaggcaattttagttaaaaggtttgattgtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 aattacaggacttaatttttagggaagaaggcaattttagttaaaaggcttgattgtaga 447

                                                                       
Query: 61  tggaaaattggtgcctgaaacacttgatcatatgggaacagctagcctttgtgcccactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggaaaattggtgcctgaaacacttgatcatatgggaacagctagcctttgtgcccactc 387

                                                                       
Query: 121 ctcagtgactcaggacagatgaatcaaacaaaactctcttccagctactattgtaaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcagtgactcaggacagatgaatcaaacaaaactctcttccagctactattgtaaactt 327

                                                                       
Query: 181 ggaagagtctgcgctcctggagtaccttcagccgctaatatttgggactctcctttctaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 326 ggaagagtctgcgctcctggagtaccttcacccgctaatatttgggactctcctttctaa 267

                                                                       
Query: 241 ataaataggagagatctggagcccccttcctcctccatgaactaatttctccacaatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataaataggagagatctggagcccccttcctcctccatgaactaatttctccacaatcct 207

                                                                       
Query: 301 caca-----------gtacgaaagagctgtcagcgctgtccgaatgaaaatggagtgccc 349
           ||||           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cacagtccgttccaggtacgaaagagctgtcagcgctgtccgaatgaaaatggagtgccc 147

                                                            
Query: 350 tgggaggatccttataatgacaaaaataaatcatgggctggaaagatgg 398
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 146 tgggaggatccttataatgacaaaaataaaacatgggctggaaagatgg 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)