Query= MSMg01no388_d07.b1 MSMg01no388_d07.b1 CHROMAT_FILE:
MSMg01no388_d07.b1 PHD_FILE: MSMg01no388_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:29 2005
(580 letters)
>mm_chr16_83884889_83885869
Length = 981
Score = 833 bits (431), Expect = 0.0
Identities = 468/483 (96%), Gaps = 6/483 (1%)
Strand = Plus / Minus
Query: 13 gaattctttac-acgatactgagggggcacattcttatgcattagttgttttcttaacta 71
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattgtttacaacgatactgagggggcacattcttatgcattagttgttttcttaacta 419
Query: 72 acttaaaatcaccacgaagtgaaacagaagcaagtatggggtgttcataattatacaaat 131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 acttaaaatcaccacgaagtgaaacagaaacaagtatggggtgttcataattatacaaat 359
Query: 132 ggttcattaagttttctgttgacaacacaacatttgtgcctacatttctccttgatatgc 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggttcattaagttttctgttaacaacacaacatttgtgcctacatttctccttgatatgc 299
Query: 192 ttatatttctcattcacacttgtttgctttaatacgttagatgcaattctacctccacaa 251
|||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 298 ttatatttctcattcacacttgtttgctttaataagttagatgcaattttatctccacaa 239
Query: 252 tgaggttattaaaccaaggatacacgagccgggcatggtggcacatgcctttaatcccag 311
| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 238 taaggttattaaaccaaggatacacgagctgggcatggtggcgcatgcctttaatcccag 179
Query: 312 cactcggcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 cactcggcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagt 119
Query: 372 cagggctatacagagaaaccctttctcgaaaaacaaaacaaaacaaaacaaaacaaaaca 431
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 118 cagggctatacagagaaaccctttctcga-----aaaacaaaacaaaacaaaacaaaaca 64
Query: 432 aaacaaaacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatactcaaaagtta 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaacaaaacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatactcaaaagtta 4
Query: 492 cat 494
|||
Sbjct: 3 cat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_d07.g1 MSMg01no388_d07.g1 CHROMAT_FILE:
MSMg01no388_d07.g1 PHD_FILE: MSMg01no388_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:29 2005
(567 letters)
>mm_chr16_83711303_83712269
Length = 967
Score = 1050 bits (543), Expect = 0.0
Identities = 561/567 (98%)
Strand = Plus / Plus
Query: 1 cagaaaatggctagttctctgatcttatgcttggaaagctcagctgatctcatatagaca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cagaaaatggctagttctctgatcttatgcttgcaaagctcagctgatctcatatagaca 260
Query: 61 taaaattttaagcagaaatagagtcaaatagaattccactaaaataaatggctcatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaattttaagcagaaatagagtcaaatagaattccactaaaataaatggctcatggat 320
Query: 121 tagtgcactaactggatctatttaagcactttaatagaatgatctgatttattcctgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgcactaactggatctatttaagcactttaatagaatgatctgatttattcctgagg 380
Query: 181 taagtattggctgtttctttgtaaaaaaagggaaacacaatcacattcaattgttttgaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtattggctgtttctttgtaagaaaagggaaacacaatcacattcaattgttttgaa 440
Query: 241 agaggtacctgcagatgtaaataaagttcatattttaagtgtctttttgagcagttgaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggtgcctgcagatgtaaataaagttcatattttaagtgtctttttgagcagttgaaa 500
Query: 301 ttagtgcagatatactaattacacaagcaccaatcttgaggcgaataaagtttaaatgtt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ttagtgcagatatactaattacacaagcaccaatcttgaggccaataaagtttaaatgtt 560
Query: 361 aatctttgaactcataaaaatgtagatcatgactaaatttcaagctttataacttccatt 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctttgaactcataaaaatgtagatcatgactaaatttcaagctttataacttccatt 620
Query: 421 gtaaaatcatgtaattaattaaattggaatgtcctacagttccaagaaatattagaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaaatcatgtaattaattaaattggaatgtcctacagttccaagaaatattagaacag 680
Query: 481 aatgaacttagcattaaatgaaggttgaattgacttgattatgtgaccatgaattactta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgaacttagcattaaatgaaggttgaattgacttgattatgtgaccatgaattactta 740
Query: 541 gaaagggaacttagaattttcttaggt 567
||||| |||||||||||||||||||||
Sbjct: 741 gaaagagaacttagaattttcttaggt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
