Query= MSMg01no388_g11.b1 MSMg01no388_g11.b1 CHROMAT_FILE:
MSMg01no388_g11.b1 PHD_FILE: MSMg01no388_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:44 2005
(500 letters)
>mm_chr16_11891206_11892105
Length = 900
Score = 480 bits (248), Expect = e-139
Identities = 289/304 (95%), Gaps = 7/304 (2%)
Strand = Plus / Minus
Query: 1 aactctgctgtttgagggataaaggagatgggtgctctcagagcagccatctttccagga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 303 aactctgctgtttgagggataaaggagatgggtgctctcagagcagctatccttccagga 244
Query: 61 caaagtttatgtagccccacacctttaattcaacctgttctttaataactggaagaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 243 caaagtttatgtagccccacacctttaattcaacctgttctttaataactggaagcaaca 184
Query: 121 atgacttttccttaatatctcttaatatcaatggactcaaatccccaataaaaagacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atgacttttccttaatatctcttaatatcaatggactcaaatccccaataaaaagacata 124
Query: 181 ggctaacagactggtta-tgtaaacaggacccaacgttttgctgcacacaggaaacccac 239
|||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||||
Sbjct: 123 ggctaacaaactggttact-taaacaggacccaacattttgctgcatacaggaaacccac 65
Query: 240 ctcagtgataat--ctattgacactacctcagagtaaaaggctggaaaacaagtttccaa 297
||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctcagggataaagac-a--gacactacctcagagtaaaaggctggaaaacaagtttccaa 8
Query: 298 gcaa 301
||||
Sbjct: 7 gcaa 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_g11.g1 MSMg01no388_g11.g1 CHROMAT_FILE:
MSMg01no388_g11.g1 PHD_FILE: MSMg01no388_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:44 2005
(458 letters)
>mm_chr16_11678428_11679285
Length = 858
Score = 785 bits (406), Expect = 0.0
Identities = 448/468 (95%), Gaps = 12/468 (2%)
Strand = Plus / Plus
Query: 1 acttacctatactgttgtctgtgttctgtatgcattgcagctagccatactgttactgat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 193 acttacctatactgttgtctgtgttctgtacgcattgcagctagccatactgttactgat 252
Query: 61 cactttgtatgcgtgtgcaagcacatttttaaatgtgaatatgtatgcatctttctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cactttgtatgcgtgtgcaagcacatttttaaatgtgaatatgtatgcatctttctctct 312
Query: 121 tgctctccactttgtatttagagatggggtctcatcctgaatccagagctcatttgtttg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 313 tgctctccactttgtatttagagatggggtctcatcttgaatccagagctcatttgtttg 372
Query: 181 gctagattgtttggttagtgagccctgaagatcttgctcagtgctagatggacacacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctagattgtttggttagtgagccctgaagatcttgctcagtgctagatggacacacacc 432
Query: 241 tttatttccacttttccatgggtgctgccgagcacatcccaggtcctcatgcttgcacag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 accacatccacttttccatgggtgctgccgagcacatcccaggtcctcatgcttgcacag 492
Query: 301 tggtcactttactctccagccacacattggtgccacaca---c-------gagctgtgca 350
||| |||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct: 493 tgggcactttactctccagccacacattgg--ccacacagttccacagaggagctgtgca 550
Query: 351 ggagctaacgtggaagaatcgaggggtgcctcactcttggagagcagtggtagtgatttt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggagctaacgtggaagaatcgaggggtgcctcactcttggagagcagtggtagtgatttt 610
Query: 411 aggtcgtcctgggggagtgttccatgtactgcctgtaatgctgagttg 458
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggtcgtcctgggggagtgttccatgtactgcctgtaatgctgagttg 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
