Query= MSMg01no388_h22.b1 MSMg01no388_h22.b1 CHROMAT_FILE:
MSMg01no388_h22.b1 PHD_FILE: MSMg01no388_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:51 2005
(523 letters)
>mm_chr16_92010594_92011515
Length = 922
Score = 590 bits (305), Expect = e-173
Identities = 468/535 (87%), Gaps = 34/535 (6%)
Strand = Plus / Plus
Query: 5 gaattcatgccccccttttctt-atcatcactgaggaacgtagcacttagaaaaatctaa 63
|||||||||||| |||||| || ||||||||||||||| |||||||||||| | ||||||
Sbjct: 190 gaattcatgccctcctttttttaatcatcactgaggaatgtagcacttagagacatctaa 249
Query: 64 atctgtggtcctgggccgtggtcggtcacatttggctccataataaactttgtttctttc 123
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atctttggtcctgggccatggtcggtcacatttggctccataataaactttgtttctttc 309
Query: 124 atcaagttcaatatggactctctggtgtgtgccattacatagtctgagataaaaatattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atcaagttcaatatggactctctggtgtgtgccattacatagtctgagataaaaatattt 369
Query: 184 gttgactgaaagaattttaaaataccgaagtagctaaaacaccaaaacaacaacaa-caa 242
||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 370 gttgaatgaaagaattttaaaatactgaagtagctaaaacaccaaaacaa--acaaacaa 427
Query: 243 -caacaacaaacccagacaatataaaagcctgcaagatgcaaaacaactcgaatgtggaa 301
||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 428 acaaaaa-aaacccagacaatataaaagcctgcaagatgcaaaacaactggaatgtggaa 486
Query: 302 cactggaaaatgggacactggaa---------------aatggaacactggaagaaggaa 346
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 487 cactggaaaatgggacactggaagaaggaacactggaaaatggaacactggaagaaggaa 546
Query: 347 cactggaatgtggaacacttgaaatatgaaa-cactggggtatg--gaacactag-aata 402
|||||||| ||||||||||| |||||| || ||| || ||| ||||||| | ||||
Sbjct: 547 cactggaaaatggaacacttgtaatatggaatcaccgga--atgtagaacacttggaata 604
Query: 403 tggaacaattagaatatggaaaacacctggaat--gcggaacactggaacatggaacacc 460
||||||| | ||||||||||| || ||||||| | || | ||||| | ||||||||
Sbjct: 605 tggaacact-agaatatggaa--caactggaatatggggca-actgggatgtggaacac- 659
Query: 461 tggagtatgaaacactggaatatggaacacttgaaatatggaacaactggaatat 515
| || |||| |||||| ||| |||||||| ||| |||||||||| ||||||||||
Sbjct: 660 tagaatatggaacactagaaaatggaacatttggaatatggaaccactggaatat 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_h22.g1 MSMg01no388_h22.g1 CHROMAT_FILE:
MSMg01no388_h22.g1 PHD_FILE: MSMg01no388_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:51 2005
(242 letters)
>mm_chr16_92160666_92161307
Length = 642
Score = 395 bits (204), Expect = e-114
Identities = 228/242 (94%), Gaps = 10/242 (4%)
Strand = Plus / Minus
Query: 1 aaacaggaacccaagaaaaactgtattttgagcttagtcttgtcaacctaagataaagtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 543 aaacaggaacccaagaaaaactgtattttgagcttagtcttgtcaacctaggataaagtc 484
Query: 61 taattgagagcaaagcatagtctatctgctagggattgagctcagtcacatccaggaaga 120
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 483 taattgagagcaaagcatagtctatctgctagggattgagc----------ccaggaaga 434
Query: 121 cagattcgagcagctgtgaggatgcctgtcactctacaaagtgaacttggagcttgagtt 180
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 433 cagatccgagcagctgtgaggatgcctgtcactctacaaagcggacttggagcttgagtt 374
Query: 181 gacagtccctggatttgttggacttgtgaatagagctggaggaagttaaggcttagaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gacagtccctggatttgttggacttgtgaatagagctggaggaagttaaggcttagaagg 314
Query: 241 aa 242
||
Sbjct: 313 aa 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
