Query= MSMg01no388_i02.b1 MSMg01no388_i02.b1 CHROMAT_FILE:
MSMg01no388_i02.b1 PHD_FILE: MSMg01no388_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:51 2005
(479 letters)
>mm_chr16_12083877_12084756
Length = 880
Score = 804 bits (416), Expect = 0.0
Identities = 464/480 (96%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 1 atgggagaatttctcctttac-aaatatggctacatcatcttgagcaatgcacactaccc 59
||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 201 atgggcgaatttctcttttacaaaatatggttacatcatcttgagcaatgcacactaccc 260
Query: 60 gctaactcttcagagacttgtgttggtatattctatggctcccatgatgctcctctgtgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaactcttcagagacttgtgttggtatattctatggctcccatgatgctcctctgtgc 320
Query: 120 ccagccaggctccgtctgcttccctgggtaccgcagctgtgcactgagatcgtgtggctg 179
|||| |||||||| ||||||| |||| ||||| |||||||| ||||||||||||||||||
Sbjct: 321 ccagtcaggctccatctgcttgcctgagtaccacagctgtgtactgagatcgtgtggctg 380
Query: 180 agcatctttcattaaatgcaggcacagtggcctcactgctcacggaagagaagattttgg 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatctttcattaaatgcaggtacagtggcctcactgctcacggaagagaagattttgg 440
Query: 240 agaagggatgtggggatgcatgactccaggtcctgagtgactcactccaccagggctctt 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagggatgtgaggatgcatgactccaggtcctgagtgactcactccaccagggctctt 500
Query: 300 ccacttgtgcacagtgagctaagcttggcaggtgcttttgcctgtgtcttacagtgacct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacttgtgcacagtgagctaagcttggcaggtgcttttgcctgtgtcttacagtgacct 560
Query: 360 tgactgtgcaagtatattttaagagtgtcttcaaaactcagtgtgttactatctctgctt 419
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaccatgcaagtgtattttaagagtgtcttcaaaactcagtgtgttactatctctgctt 620
Query: 420 ggcacttttcctctgaatctttgggcatgtttgatgtccttcccctctaagttttgagaa 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ggcacttttcctctgaatctttgggcatgtttgatgtccttctcctctaagttttgagaa 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_i02.g1 MSMg01no388_i02.g1 CHROMAT_FILE:
MSMg01no388_i02.g1 PHD_FILE: MSMg01no388_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:51 2005
(502 letters)
>mm_chr5_125776722_125777622
Length = 901
Score = 909 bits (470), Expect = 0.0
Identities = 494/506 (97%), Gaps = 9/506 (1%)
Strand = Plus / Minus
Query: 1 attcttcagcccggaggcatgcaggtaagccctgtgtagggactccctgcctcctaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 attcttcagcccggaggcatgcaggtaagccctgtgtagggactccctgcctcctaccag 839
Query: 61 gaaactctgcttctgagatggttcagggtccactcaggtagctccctggaagtgtgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaaactctgcttctgagatggttcagggtccactcaggtagctccctggaagtgtgctca 779
Query: 121 aagtgtctggccttctgtgtactatgtctcaatggtttttcttgtcactgtgacaagata 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 778 aagtgtctggccttctgtgtactatgcctcaatggtttttcttgtcactgtgacaagata 719
Query: 181 cctgacagaggtgacttgcgaggtgtctggggactcagtcatggtggcagtggtgaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cctgacagaggtgacttgcgaggtgtctggggactcagtcatggtggcagtggtgaaggg 659
Query: 241 tactggt----atttattgtgttaaagtcttgtagcttgggctccaccatccccagggtc 296
||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tactggtaggaa---a--gtgttaaagtcttgtagcttgggctccaccatccccagggtc 604
Query: 297 ctaactgtggcctaggaagacatggtgggtcttcagagacccatttccaggtggtgccct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctaactgtggcctaggaagacatggtgggtcttcagagacccatttccaggtggtgccct 544
Query: 357 agcctgtgcatccattctggccacaccagagatgactttggcctggggactcactgggct 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 543 agcctgtgcatccattctggccacaccagagatgactctggcctggggactcactgggct 484
Query: 417 gatctttgagccctcttcctctctagctcacacaggcagccatgcttcatgccaggtgtg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gatctttgagccctcttcctctctagctcacacaggcagccatgcttcatgccaggtgtg 424
Query: 477 aacacagccacaacggggtgagcaaa 502
||||||||||| ||||||||||||||
Sbjct: 423 aacacagccacgacggggtgagcaaa 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
