BAC Information

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BAC

Clone NameMSMg01-389A11
Chromosome16 (Build37)
Map Location 80,508,269 - 80,508,665
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389A11.T7 (MSMg01no389_a11.b1)MSMg01-389A11.TJ (MSMg01no389_a11.g1)
ACCAG491381AG491382
length755797
length of high quality
(start - end)
399 (79 - 477)166 (84 - 249)
definitionCHROMAT_FILE: MSMg01no389_a11.b1 PHD_FILE: MSMg01no389_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:30 2005CHROMAT_FILE: MSMg01no389_a11.g1 PHD_FILE: MSMg01no389_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGCTTTTATGTTATCACTTAAGTAATACTAGTTCATAGGC
TGCGTTTAAAAACATTTAGTTTTATTTTTAAAAAGGAAAATAGAATACTT
AATGTTGAGGGAACATTAATGTTCAGAAGGGATAGCACACATTTAGAATA
AACATTTTCACTTCTAATTATGAGAAATGCACTGCTATACCAAATTGGAT
TAAGATATAATATCAAATCCAATCTTGGTGGCTAAGGAAAGAGTTCTGTC
AGAAAAGTGAGCAATAAGTGACCTGAGTTTTGCTCTCTTGAACCCACATT
TAAAAACAGAATGACATCTCAAGTTTGTAGCCCCAGCCCTTCTTATGTTT
GTGGCACAGACCAGAGAGATCCCTGGAGCTCACTAGGCCAACATATCCAG
CATGATTTGTGCACTTCAGATTCTGCAAGAGAACCTGTTTTAAATGAACT
AATAACCAAACAAACCAACAAACATGAAAAAAGTGGAGAGAAATCCAAGA
AGACACCAGAATAGATTTATAGATTTCTTCTATTTTCCACCATTCATTGA
CACACACACACATACACACACCCACCCACACTCTCCAATTACTGCGTGTG
CGTGTGCGTGTACATGCGCATGCATGGGTGAATACCTCCCTCCCCCCACC
TACCCCTGCCACACTTGCCCATAACTACCATACTCGACCACTCCCTCCCC
GTGCT
NNNTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCTAGAGACAAGTA
GTAGATTCACCCAGGAATATTTAATGAGACAGGTAACCAGTCATATGGCA
AAAAGTAGGTTAAAATAAATAGGTTATTTAAGGGACAGTCTAGTCAGAGA
AGAGCCTACCTATACAGCCAAGGTATTTGTAATATATTTTAAATCTNNNG
AGTCNNTTATACNCTTGGGGAGCATGTGGGGACTGGGGATATANGAAACA
GACCTAACATGTACAATAGATAGTCTTGAATTCATTAAAAAGTTTTATTC
TCAAGGGGGAAGGGCGCCCNNNNNNACTGAAGGGGGGNNNNNAGGNNACA
GATACAATCTCTATNCCTTCCTTCCCCCCCCCCCTCTCTTCTTCCCCCTC
TTTTTCTTCCCCCCCCCCCTCTTCCTCCNCCTGTTTCCCCCTTTCATCCC
TTTTCCCTCCCTTTTCTCCCTCTTTTTCCCCCTTTCTCCCCCTNTCCCNC
CCNTNNNCCNNNNAAGGAGAAGGAGGAGAGGAGGGGGGGCCCCCCANNNN
NTTTATAGATTTTTTTTNCCNNNTGCCGGTGGCGCGGAANNAATCCCTTC
TCTTCTCCCCCTCTTCNNCCTCTTTTTTCNNTNTTTTCTNACTTNNNNNN
NNNNNNNNTTNNNNNNNNNNNNNTTGTGNTTTTTTTGNNNCTTTGGTGGG
GNNNNNNNNNNNNNNNNNNTAGTNNNNNNNNNNNNNCTACTNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_a11.b1 MSMg01no389_a11.b1 CHROMAT_FILE:
MSMg01no389_a11.b1 PHD_FILE: MSMg01no389_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:30 2005
         (399 letters)



>mm_chr16_80508069_80508867
          Length = 799

 Score =  721 bits (373), Expect = 0.0
 Identities = 391/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtaatactagttcataggctgcgtttaaaaacatttagttttatttttaaaaaggaa 60
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtaatactagtccataggctgcatttaaaaacatttagttttatttttaaaaaggaa 260

                                                                       
Query: 61  aatagaatacttaatgttgagggaacattaatgttcagaagggatagcacacatttagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagaatacttaatgttgagggaacattaatgttcagaagggatagcacacatttagaa 320

                                                                       
Query: 121 taaacattttcacttctaattatgagaaatgcactgctataccaaattggattaagatat 180
           |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 321 taaacattgtcacttctaattatgagaaatgcacttttataccaaattggattaagatat 380

                                                                       
Query: 181 aatatcaaatccaatcttggtggctaaggaaagagttctgtcagaaaagtgagcaataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatcaaatccaatcttggtggctaaggaaagagttctgtcagaaaagtgagcaataag 440

                                                                       
Query: 241 tgacctgagttttgctctcttgaacccacatttaaaaacagaatgacatctcaagtttgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgacctgagttttgctctcttgaacccacatttaaaaacagaatgacagctcaagtttgt 500

                                                                       
Query: 301 agccccagcccttcttatgtttgtggcacagaccagagagatccctggagctcactaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccccagcccttcttatgtttgtggcacagaccagagagatccctggagctcactaggc 560

                                                
Query: 361 caacatatccagcatgatttgtgcacttcagattctg 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacatatccagcatgatttgtgcacttcagattctg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)