Query= MSMg01no389_c01.b1 MSMg01no389_c01.b1 CHROMAT_FILE:
MSMg01no389_c01.b1 PHD_FILE: MSMg01no389_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:37 2005
(566 letters)
>mm_chr16_12300354_12301319
Length = 966
Score = 1065 bits (551), Expect = 0.0
Identities = 562/566 (99%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 2 aaaa-taaattatgttcccagagaccatttgagaccaatcaatggacatctgacaaaaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactaaattatgttcccagagaccatttgagaccaatcaatggacatctgacaaaaag 260
Query: 61 aggagtaacatttcttccatttcccctcttctcttcttctctttcctccactcccctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagtaacatttcttccatttcccctcttctcttcttctctttcctccactcccctcct 320
Query: 121 ttccctctctctccttcttttctccttttctctccctcctttcccctcccttcaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctctctctccttcttttctccttttctctccctcctttcccctcccttcaaatatt 380
Query: 181 caacaagtaaatgcaaacatcagagtatgttctaatggcttggcatagtgagccatatct 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacaagtaagtgcaaacatcagagtatgttctaatggcttggcatagtgagccatatct 440
Query: 241 gtaatcatggcatggagccaagagaattgtgaattcagggctccctgtgctgcatagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaatcatggcatggagccaagagaattgtgaattcagggctccctgtgctgcatagcaa 500
Query: 301 gtccttgtctcaaaaccaaatcaaatagaaaagcagcacagagcgtgtcaccgacgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccttgtctcaaaaccaaatcaaatagaaaagcagcacagagcgtgtcaccgacgttgg 560
Query: 361 agctaaggaaatgaagaagacattagtccctgccccaaacggtgggcagttagtgtggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctaaggaaatgaagaagacattagtccctgccccaaacggtgggcagttagtgtggga 620
Query: 421 gagagaacctcctgggttcgagccaaaggcaaccaaaaggaagggtttggggggatttgc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagaacctcctgggttcgaggcaaaggcaaccaaaaggaagggtttggggggatttgc 680
Query: 481 ttcattagaacaatgtaccacatccagagagggcacagggtgtgtgtgctcagtgagagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcattagaacaatgtaccacatccagagagggcacagggtgtgtgtgctcagtgagagt 740
Query: 541 aaggtcacggnccccctcccctcccc 566
|||||||||| |||||||||||||||
Sbjct: 741 aaggtcacggcccccctcccctcccc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_c01.g1 MSMg01no389_c01.g1 CHROMAT_FILE:
MSMg01no389_c01.g1 PHD_FILE: MSMg01no389_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:37 2005
(522 letters)
>mm_chr16_12484703_12485624
Length = 922
Score = 994 bits (514), Expect = 0.0
Identities = 520/522 (99%)
Strand = Plus / Minus
Query: 1 atcaaagagcatagttatttagacacagagaaagacaaagactcttcaagaagttaatcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atcaaggagcatagttatttagacacagagaaagacaaagactcttcaagaagttaatcc 663
Query: 61 aagaataaatgaaatcggaaatgatctttcagatgctgcttattatcaaattgtctcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aagaataaatgaaatcggaaatgatctttcagatgctgcttattatcaaattgtctcctt 603
Query: 121 aataaaactattccctggtgttcattgtaattggctattgtcagtttaatattgtctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aataaaactattccctggtgttcattgtaattggctattgtcagtttaatattgtctata 543
Query: 181 tgatataatgtctgctgaataacaataatgaatggagataattatatttgggtgaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgatataatgtctgctgaataacaataatgaatggagataattatatttgggtgaaagag 483
Query: 241 ccatcttgcttattcactgaaagacacacaccccgcaattgtgcaagttgagtgaataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccatcttgcttattcactgaaagacacacaccccgcaattgtgcaagttgagtgaataca 423
Query: 301 gaatggggagcatcctgtgttgcttgttctaaatttgcctctttgttttctcagggtgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaatggggagcatcctgtgttgcttgttctaaatttgcctctttgttttctcagggtgtc 363
Query: 361 tcttgcctttctacgatccaacatctaagtagcaagatgattgcttttctttcctccttg 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcttgcctttctatgatccaacatctaagtagcaagatgattgcttttctttcctccttg 303
Query: 421 tggtatttacatcaaaggcaattgcttcttcctcctcagattctggtctattttatatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tggtatttacatcaaaggcaattgcttcttcctcctcagattctggtctattttatatcc 243
Query: 481 cattaaagatcttttgagcataacttttccaagaggaactca 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cattaaagatcttttgagcataacttttccaagaggaactca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
