BAC Information

Click to search

BAC

Clone NameMSMg01-389N06
Chromosome16 (Build37)
Map Location 58,412,509 - 58,413,048
singlet/doubletsinglet
Overlap geneDcbld2
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
Downstream geneSt3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389N06.T7 (MSMg01no389_n06.b1)MSMg01-389N06.TJ (MSMg01no389_n06.g1)
ACCAG491990AG491991
length767757
length of high quality
(start - end)		309 (75 - 383)540 (81 - 620)
definitionCHROMAT_FILE: MSMg01no389_n06.b1 PHD_FILE: MSMg01no389_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:33 2005CHROMAT_FILE: MSMg01no389_n06.g1 PHD_FILE: MSMg01no389_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGTCATTTCGTGGGGATGGTAGGAACCTAGTGCAACTGG
AATCTATTTTAGTGGGGATGGTAGAAATCTAGTTCAACAGTGACCTTAGC
AAAAAGTCCTAGTAATTGAGAATACAGAGCCTGAAACAGTCATCTCCTCT
AACCAAACAAGGTTTCCAGTGGAGGGATTGGGATATCAATCCAGCCAAAA
AACTGGTGCAGAACTTGTCGGAGTGGCAACCAATGACTGGTCCAACGATT
ATATATATATATATATATATATATATANTATATATATATATATATATATA
TATATATATATATATATATATATATATATATAGACGAGTGAGTAGATATA
TATACACATACACATATACCCCCCTCCTTCTACAGCTATCTCCCTATACC
TATCTACCCCTTCCTCTTCTTTCCCCTTCTCCTTGTGCGTTCGTGTGCGC
TGTCCTCGTCTCTCCTCCCCTTCTCCCTTATTCTTACTCCCTCTTTCCTC
CCCTTTTTTTCTCTCTTCTACCTTCCTCCCCTCCCCTTTTCTTCCCTCCT
TCCCTTCCCTCCCTTCCTTCTTTTTTTTCTGCCCTCTCCCCTGTCCCTTC
CTTTCCCTTCTTTCCCCTTTTTTTTCCCTTCCGCGCTTTTCGCGCCGACC
CCCCCTCCCCCTCCTTCCCCTTCCTTCCCCCCTTCCTTCCCTTTCCCTTC
CCTTCCCCTCCCTTCCG

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTGATAAAATTTTACAT
TTTATAATTTGCTGGTGATTTATAAATATGTTTGCCTGTGTTAAAATTAT
GAAAGTATGTGACTAGAGAAGGGGGGATGAAAAATTGATAAAGTAAAAGA
CATCTGTGGATCGTTACCATCTAAGATTTTTGCTTTATATTAACACTATC
TTCTGTAAAATATTTTCTAGGATATATATGAAGTGCTGTGGCTGCAAAGT
TGTGAGAAAGTTATCCAAAACCAAACAAAGCAGGAACCCCACAAGAAACG
CTGCTTAGCCTGGCTCACTTCCTGTCTCAGCAGTCACATTTGGGCAGTGG
GACTATCTACCACTCCTCATCCTAGGCCAGCGTTCCACACCCTTCCAAAC
AGCCACTGTCTACTTGTATGTATTTAATCCAGGGTCACCATTTTCAGTCT
TATATTCATATTGCTCGTTAGACTACAACTACATAAATTACTCTGTTGAA
CCTGAATTAAACACATGCAAATATCGGGCACCTACTACCATATCTTGGTT
ATTTGGAGGGATGACCTAAACTGAGCATGATTAGGAAAAGTCTGACAGAC
AGACAGACAGCCTCCGATTAGAGCTACCTTAAAGAGCCCTGTTTTGGTTT
TCACAGTGGTTCCCCAACCTTCCCAAGGCTGAGACCCTTTTAAACAGTCC
TAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_n06.g1 MSMg01no389_n06.g1 CHROMAT_FILE:
MSMg01no389_n06.g1 PHD_FILE: MSMg01no389_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:33 2005
         (540 letters)



>mm_chr16_58412309_58413248
          Length = 940

 Score =  982 bits (508), Expect = 0.0
 Identities = 532/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtgataaaattttacattttataatttgctggtgatttataaatatgtttgcctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttgtgataaaattttacattttataatttgctggtgatttataaatatgtttgcctgtg 681

                                                                       
Query: 61  ttaaaattatgaaagtatgtgactagagaaggggggatgaaaaattgataaagtaaaaga 120
           ||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 680 ttaaaattatggaactatgtgactagagaaggggggacgaaaaattgataaaataaaaga 621

                                                                       
Query: 121 catctgtggatcgttaccatctaagatttttgctttatattaacactatcttctgtaaaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 catctgtggatcgttaccatctgagatttttgctttatattaacactatcttctgtaaaa 561

                                                                       
Query: 181 tattttctaggatatatatgaagtgctgtggctgcaaagttgtgagaaagttatccaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tattttctaggatatatatgaagtgctgtggctgcaaagttgtgagaaagttatccaaaa 501

                                                                       
Query: 241 ccaaacaaagcaggaaccccacaagaaacgctgcttagcctggctcacttcctgtctcag 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 ccaaacaaagcaggaaccccacaagaaacactgcttagcctggctcacttcctgtctcag 441

                                                                       
Query: 301 cagtcacatttgggcagtgggactatctaccactcctcatcctaggccagcgttccacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 cagtcacatttgggcagtgggactatctaccactcctcatcctaggccagcattccacac 381

                                                                       
Query: 361 ccttccaaacagccactgtctacttgtatgtatttaatccagggtcaccattttcagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttccaaacagccactgtctacttgtatgtatttaatccagggtcaccattttcagtct 321

                                                                       
Query: 421 tatattcatattgctcgttagactacaactacataaattactctgttgaacctgaattaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatattcatattgctcgttagactacaactacataaattactctgttgaacctgaattaa 261

                                                                       
Query: 481 acacatgcaaatatcgggcacctactaccatatcttggttatttggagggatgacctaaa 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 acacatgcaaatatcgggcacctacttccatatcttggttatttggagggatgacctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |