BAC Information

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BAC

Clone NameMSMg01-389N08
Chromosome16 (Build37)
Map Location 97,013,263 - 97,181,860
singlet/doubletdoublet
Overlap geneDscam
Upstream geneLOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389N08.T7 (MSMg01no389_n08.b1)MSMg01-389N08.TJ (MSMg01no389_n08.g1)
ACCAG491994AG491995
length769764
length of high quality
(start - end)		190 (59 - 248)494 (82 - 575)
definitionCHROMAT_FILE: MSMg01no389_n08.b1 PHD_FILE: MSMg01no389_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:34 2005CHROMAT_FILE: MSMg01no389_n08.g1 PHD_FILE: MSMg01no389_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,013,263 - 97,013,435)(97,181,526 - 97,181,860)
sequence
CCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGAGA
TCCGNGGAATTCTGTGATTTCATTCCCTCTCATATATTATCCCTGGATAG
ATCCATTCCACCCTATAGCATATTCAACTGTCTGCTTACATTGCTTTGTG
CTAAACTGGTAGTAGCATTTGAGTGTTAATGAACAGGTCACCAGTCTTCT
ACTAATTGTGGCATCTGAAAGTGGCCTAATCTCAGCACATTTCAAGCAGA
CTGGATACGCCCATGGAGTGGACTCTCAGTGAGATAGCCATGCGTCACTA
AGATTAAACATACAACATACAGATGGTTTTCCCTTCCTTCCCACATCTGG
TAAAATTAATCCCACTAGTTTTAGATTCTGTAGTTTCTAATGTTGACACA
CATGTATGGACCTTGGCGCTGCCGACACATGGCAACCCTCAGCTGGCACA
TGACCTGCACTGATGACGCGCCTACCATCTCCCTGAAATAAGCCCTTTAC
ACGCCTCTTGACCTGACTGCCGCCTCCTCGAACATCATTCGTCCCCCTAA
TTACCCCTCACTGCCTTCCCTCCCTACCCCTTCCCTACCCTCCCTCCCCT
CCCTGCCCATCCTCCTTTCTCTCCTCCCTCCTCCCCTCTCCCTTCCCCCC
CCCTTTTTTTCCCCTTTTTTTTCCCTTTCCCCTTCTTGCCCCACCTTCTC
CCTCCCCCTCCCTTCCCCCTCTCTTCCCCCCCTTCCTTCCCCTTCCTTCC
CCCCTCCCCCTCCCTTTCC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAAAGAACAAATATC
TAAAAGGCTGAATGGGCCTTTGTGGAGATTTTTAAAATCTGTTTAATTTA
TTAAGTAGTATTCCCTGAATGCTTATGGCATGCCAAGAATTAACCCAAGT
TTGGGATGATTCATTCTTTTTTTTATTATTTAATTTAATTTTATTTTTTG
CATATTCACGTTACATCCCACTCACTGCCCCCTTTCCTGTCACCACCTCC
CACAATCTTTCCCCCATCCCCCTCTCCTTCTTCTTTGAGTGTGTGGGGCC
CCCTGGGTATCCCTCCCTCACCCTGGCACTTCAAGTCTCTGTGAGGATAG
GTGCTTCCTCTCCCACTGAGGCCAGACAAAGCAGTCCAGCTAGAAGAACA
TATCTCACAGACAGGCAACAGTTTTGGGGATAGTTCCTGCTCCAGTTGTT
TCAGACCCACATGAAAGCCAAGCTGCACATCTGGTACACATGTACGGGAA
GGCCTGGGTCCAGCCCGTGTATGTTCTTTTGGTGGTGGTTCAGACTCTGA
GAGCCCCAAGAATTCCGGTTAGTTGACTCTGGTGTTCTTCCTGTGGAGTC
CCTACTCCCCTTCAGGCTGTCGTCCTTCCTCCCGGTCCTCCTCTAAAGGC
CCCCAACTCCCTCCCATGGTTTTGCTGTGGGGGACCTGTTCCTATCTCAT
TTTTTTCTTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_n08.b1 MSMg01no389_n08.b1 CHROMAT_FILE:
MSMg01no389_n08.b1 PHD_FILE: MSMg01no389_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:34 2005
         (190 letters)



>mm_chr16_97013046_97013635
          Length = 590

 Score =  311 bits (161), Expect = 1e-89
 Identities = 170/173 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  cctctcatatattatccctggatagatccattccaccctatagcatattcaactgtctgc 77
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 218 cctctcatatattatccctggatagatccattccaacctatagcatattcaactgtctgc 277

                                                                       
Query: 78  ttacattgctttgtgctaaactggtagtagcatttgagtgttaatgaacaggtcaccagt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttacattgctttgtgctaaactggtagtagcatttgagtgttaatgaacaggtcaccagt 337

                                                                
Query: 138 cttctactaattgtggcatctgaaagtggcctaatctcagcacatttcaagca 190
           ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 338 cttctacaaattgtggtatctgaaagtggcctaatctcagcacatttcaagca 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no389_n08.g1 MSMg01no389_n08.g1 CHROMAT_FILE:
MSMg01no389_n08.g1 PHD_FILE: MSMg01no389_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:34 2005
         (494 letters)



>mm_chr16_97181526_97182419
          Length = 894

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaaagaacaaatatctaaaaggctgaatgggcctttgtggagatttttaaaatctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 335 acagaaaagaacaaatatctaaaaggctgaatgggcctttgtggagattttttaaatctg 276

                                                                       
Query: 61  tttaatttattaagtagtattccctgaatgcttatggcatgccaagaattaacccaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttaatttattaagtagtattccctgaatgcttatggcatgccaagaattaacccaagtt 216

                                                                       
Query: 121 tgggatgattcattcttttttttattatttaatttaattttattttttgcatattcacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgggatgattcattcttttttttattatttaatttaattttattttttgcatattcacgt 156

                                                                       
Query: 181 tacatcccactcactgccccctttcctgtcaccacctcccacaatctttcccccatcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tacatcccactcactgccccctttcctgtcaccacctcccacaatctttcccccatcccc 96

                                                                       
Query: 241 ctctccttcttctttgagtgtgtggggccccctgggtatccctccctcaccctggcactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctctccttcttctttgagtgtgtggggccccctgggtatccctccctcaccctggcactt 36

                                              
Query: 301 caagtctctgtgaggataggtgcttcctctcccac 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  caagtctctgtgaggataggtgcttcctctcccac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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