Query= MSMg01no390_e15.b1 MSMg01no390_e15.b1 CHROMAT_FILE:
MSMg01no390_e15.b1 PHD_FILE: MSMg01no390_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:09 2005
(548 letters)
>mm_chr16_74479548_74480495
Length = 948
Score = 690 bits (357), Expect = 0.0
Identities = 464/547 (84%), Gaps = 76/547 (13%)
Strand = Plus / Plus
Query: 4 aatttagagtgcatttagagtgaaattttaccattttcttacccaaaatagtttattcta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatttagagtgcatttagagtgaaattttaccattttcttacccaaaatagtttattcta 325
Query: 64 gctagatcagtggaagccaagggccttccactcctgttaattctttgtgaactagctgga 123
|||||||
Sbjct: 326 gctagat----------------------------------------------------- 332
Query: 124 aaacataggcatggagagtgtccatcgaaatattacagaaatattccaagtcctagtaaa 183
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ---------catggagagtgtccatcgaaatattacagaaatattccaagtcctagtaaa 383
Query: 184 actcttaagaggcattccactgtttaattgccgtcatgattggaaacagactgaagaaag 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 actcttaagaggcattccactgtttaatcgccgtcatgattggaaacagactgaagaaag 443
Query: 244 catggcaaagcttatagggtctcaaag-gggaagaagtaagggagcctccttatctctta 302
||||||||||| || || ||||||||||||||| ||||||||||||||||
Sbjct: 444 catggcaaagc----ag--------agagggaagaagtaagggcgcctccttatctctta 491
Query: 303 ggttaaaacaatggaccgttgtaagcaacaggggtgcaat-aaaaaacgaactctagact 361
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 492 ggttaaaacaatggaccgttgtaagcaacaggggtgcaataaaaaaactaactctagact 551
Query: 362 acatcgagattatagataccgaccttgtagaaattaatctttatttgttttatgttttga 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acatcgagattatagatactgaccttgtagaaattaatctttatttgttttatgttttga 611
Query: 422 ataaagatgctaatgggagagtggagtatttcagtaattttacttctttggttaaataaa 481
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 612 ataaagatgctaataggagagtggagtatttcagtaatttttcttctttggttaaataaa 671
Query: 482 atggtcacttttttttttcaaatggattttgcatttcaatttatctattttaagagaaat 541
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 atggtcacttttttttttcaaatggattttgcatttcaatttatctgttttaagagaaat 731
Query: 542 taactca 548
|||||||
Sbjct: 732 taactca 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_e15.g1 MSMg01no390_e15.g1 CHROMAT_FILE:
MSMg01no390_e15.g1 PHD_FILE: MSMg01no390_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:09 2005
(609 letters)
>mm_chr16_74611759_74612769
Length = 1011
Score = 1100 bits (569), Expect = 0.0
Identities = 600/611 (98%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 aacacagcctgtttaaacacattcaggctggtatttgtatgc--agactttgcaaagggc 58
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 811 aacacagcctgtttaaacacattcaggctggtgtttgtatgcagagactttgcaaagggc 752
Query: 59 agcactagagaagactacacattaacttgtcgaacatgacaatctaaggctacggccccc 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 751 agcactagagaagactacacattaacttgtcgaacatgacaatctaaggctacgcccccc 692
Query: 119 cttctgtttgtgaggcagagtcaagcccgtatcactcacacccttttgagtcagtaaagc 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cttatgtttgtgaggcagagtcaagcccgtatcactcacacccttttgagtcagtaaagc 632
Query: 179 acaagtgctttgaaaccacaccctccaaaccagagcataaagacctgagacatttgatgt 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acaagtgctttgaaacgacaccctccaaaccagagcataaagacctgagacatttgatgt 572
Query: 239 gttctctttactgtggtcctcttaggaaacaaaaacccatttgaacttagatgtttcatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gttctctttactgtggtcctcttaggaaacaaaaacccatttgaacttagatgtttcatt 512
Query: 299 tacttcaatcaagccttaactatattagtatcaggaataatagtagaagctgcatctaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 tacttcaatcaagccttaactatattagtatcaggaataatagtagaagctgcatttaat 452
Query: 359 cttttccctttccttttgacttctgcctattaactacctgaaaattcattcaacaacaca 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttttacctttccttttgacttctgcctattaactacctgaaaattcattcaacaacaca 392
Query: 419 tgcctcccgagttttctctatatggtcaaatagtgtatgatgagtcctattgccagggaa 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 391 tgcctcccgagttttctctatatgatcaaatagtgtatgatgagtcctattgccagggaa 332
Query: 479 attttaaatcaatctttagggagcagatttattaagtacttggaattctaaagttagatt 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cttttaaatcaatctttagggagcagatttattaagtacttggaattctaaagttagatt 272
Query: 539 tcatgtatttgagggaagagcctaaggaaagcttaaggaacgtgattgacatgacagggt 598
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 271 tcatgtatttgagggaagagcctaagaaaagcttaaggaacgtgattgacatgacagggt 212
Query: 599 catatctagtg 609
|||||||||||
Sbjct: 211 catatctagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
