Query= MSMg01no390_k12.b1 MSMg01no390_k12.b1 CHROMAT_FILE:
MSMg01no390_k12.b1 PHD_FILE: MSMg01no390_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:38 2005
(243 letters)
>mm_chr16_92872611_92873253
Length = 643
Score = 418 bits (216), Expect = e-121
Identities = 236/243 (97%)
Strand = Plus / Plus
Query: 1 ctctccaggntgattcccacactctttgttcgtgtcgttcacagctctgcattctgccgt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctccaggctgattcccacactctttgttcgtgtcgttcacagctctgcattctgccgt 260
Query: 61 ttgttcacagaatcattcccaataaatagagaagttcaaaagaaagggatagacgttgtc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcacagaatcattcccaataaaaagagaagttcaaaagaaagggatagacgttgtc 320
Query: 121 ctcctggaggtgagtgagttcttcctgtgttttcagtaagactaggtgaccacagtttat 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 321 ctcctggaggtgagtgagttcttcttgtgttttcagtaagactaggtgaccacagggaag 380
Query: 181 tctttatgtttgggttgctgctccttggctgagtggaccttaggcatgtggcaggcatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttatgtttgggttgctgctccttggctgagtggaccttaggcatgtggcaggcatcc 440
Query: 241 caa 243
|||
Sbjct: 441 caa 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_k12.g1 MSMg01no390_k12.g1 CHROMAT_FILE:
MSMg01no390_k12.g1 PHD_FILE: MSMg01no390_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:38 2005
(509 letters)
>mm_chr16_93062084_93062991
Length = 908
Score = 911 bits (471), Expect = 0.0
Identities = 499/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 1 actactgtgctttggtgaattgatggtcttccgtcatctgctctgggtttgttgtttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 actactgtgctttggtgaattgatggtcttccgtcatctgctctgggtttgttgtttcca 649
Query: 61 ctgagctctgcagtttacgacaagtttgttgatctctggcttcaacgtcctcagtcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctgagctctgcagtttacgacaagtttgttgatctctggcttcaacgtcctcagtcaagg 589
Query: 121 ccagaaactggatgcttcctatgctctgcccaccctggatacaccttgaattcctgatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 588 ccagaaactggatgcttcctatgctctgcccaccctggatacaccttgaattcctggtgt 529
Query: 181 cgaatctaatgtctccatcttgatggaggtacaaaccctcagtctttggagataaatctt 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 528 cgaatctaatgtctccatattgatggaggtacaaactctcagtctttggaaataaatctt 469
Query: 241 cangatgcnctttcaaccactgccaccttcttccctcctgaccttttcagtacaacacca 300
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catga-gctctttcaaccactgccaccttcttccctcctgaccttttcagtacaacacca 410
Query: 301 aggaattacctaattggtttgttgttcttctccatctacgatgatccctgcacatacaaa 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 409 aggaattacctaattggtttgttgttcttctccatctaagatgatccctgcacatacaaa 350
Query: 361 cttaaagatatccaacactgtggtcccattattttccttctctaaccaccttaccttctt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 349 cttaaagatatccaacactgtggtcccattattttccttctctaactaccttaccttctt 290
Query: 421 ttttatcctccctggctttctgtctctgtgaactctatggaaggtgcttaatgaaaatga 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttatcctccctggctgtctgtctctgtgaactctatggaaggtgcttaatgaaaatga 230
Query: 481 ctgttccttaatgtgaatgcaacaggagt 509
|||||||||||||||||||||||||||||
Sbjct: 229 ctgttccttaatgtgaatgcaacaggagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
