BAC Information

Click to search

BAC

Clone NameMSMg01-391B10
Chromosome16 (Build37)
Map Location 45,090,023 - 45,090,509
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021
Downstream geneCcdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B10.T7 (MSMg01no391_b10.b1)MSMg01-391B10.TJ (MSMg01no391_b10.g1)
ACCAG492946AG492947
length773755
length of high quality
(start - end)		249 (61 - 309)489 (80 - 568)
definitionCHROMAT_FILE: MSMg01no391_b10.b1 PHD_FILE: MSMg01no391_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005CHROMAT_FILE: MSMg01no391_b10.g1 PHD_FILE: MSMg01no391_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTACTATATTTCGACAATCCGCGGAATTCATTGTTTT
TCTCTACTGAGTAGTATGCCATTGTGTAAATGTACCACTATTTCTGTATC
CATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTAT
GACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATTCCACCAGCAATGGA
GGAGTGTTCCTTGTTCTTCACATCCTTACCAGCATCTGCTGTCATCTGAA
TTTTTGATCTTAGACATTCTGATTGGTATGAAGTGGAATTTCAGGGTTGT
TTTGATTTGTTTTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGT
GCTTCTCAGCCATTTGGTATTCCTCAGTTAAGAATTCCTTGTTTAGCTCT
GTACCCCATTTTTAATAGGGTTATTTGATTTCCTGGAATCTATATTCTTG
TGCTCTTTGTATATATTGGATATTATTCTCCTATCTGATTTAGGATTGGC
AAAGACCCTCCCCTAATCTTTTGAGGGTTATTTTTTGCTACTTACCGCGC
CCTTTGCCTTACAGAAGCTCTGCCACTTTATGAGGCCCACCTTTGCCCCA
TTTTGATCCTCCCCCCCAAGCCCTTGTTGGTCCCCCCCCCGCAATTCTTT
CCCTGTTTCCCTCATCCCCCCAGGGCTTCCCCCAATTTTATTCCTCCCCA
CCCTCCCAGGGCTCCGGTTTTTATGCCGCCTTTTTCTTGTTCCCCCCCCC
CTTCTACTTTCTTTCCCCCCCCC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTATTTCATGAACCCTC
CCAACAATATGAACAGTACTGGACACCCGTGCTCCGTGAGGGAGTAGAGT
TGAGAGCAGTTATAACAGCAAGCTGGCCGTGGGTGTCCAGAGGGGAAGCC
ACCGACCACAGACCACAACAACCCTGAGCTGCCTTTCTCTTCCTGGGATC
TCAGGCTCACCTTCTAGTCTCCGACACCATGTCAGTAGGTGGCGCACTAA
ACACACGAGCAGGAGCAGATTTTTCTTGGTCTGCCCCAATCAGGGGCCAA
CTGGGATTTCTCCTGCTTGCTCAGTTTTCCATCTTGCTGTCTAAACCCTA
ACTGGGTCGTCAGAAAAGCTCTTCAGGGATGTCTGGGATGTGGGCGTTTA
CGAAGAGCAATTTATAGAACAAGTTCACATCTACCCCTTTATGGGGGGAC
CTAGAATGATTTGTGGTTTATGAGGATCTGAATTTCTAGTTTTGACAGTT
TCTCATCTAGACCAGTCCATTTTCCTGCAACCCCAGAAAGACTTGTATAG
GGGTGGCCAGTATCCCCGCGACAACTGATGTCTGGCTGATGTGTTGCCCT
TTTCTTGTGCCATCTTTATCCCCGCGTTTACTTTCCGCGGTTTGTTTTTC
TCTTCCTTCCCCTTCCCCTTTTCTCCCTTTCTTCCTTTCTCCCCTCTCTT
TCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b10.g1 MSMg01no391_b10.g1 CHROMAT_FILE:
MSMg01no391_b10.g1 PHD_FILE: MSMg01no391_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:11 2005
         (489 letters)



>mm_chr16_45089823_45090712
          Length = 890

 Score =  895 bits (463), Expect = 0.0
 Identities = 481/487 (98%), Gaps = 1/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgtatttcatgaaccctccc-aacaatatgaacagtactggacacccgtgctccgtg 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcatgtatttcatgaaccctcccaaacaatatgaacagtactggacacccgtgctccgtg 628

                                                                       
Query: 60  agggagtagagttgagagcagttataacagcaagctggccgtgggtgtccagaggggaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agggagtagagttgagagcagttataacagcaagctggccgtgggtgtccagaggggaag 568

                                                                       
Query: 120 ccaccgaccacagaccacaacaaccctgagctgcctttctcttcctgggatctcaggctc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccaccgaccacagaccacaacaaccctgagctgcctttctcttcctgggatctcaggctc 508

                                                                       
Query: 180 accttctagtctccgacaccatgtcagtaggtggcgcactaaacacacgagcaggagcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 accttctagtctccgacaccatgtcagtaggtggcgcactaaacacacgagcaggagcag 448

                                                                       
Query: 240 atttttcttggtctgccccaatcaggggccaactgggatttctcctgcttgctcagtttt 299
           |  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acctttcagggtctgccccaatcaggggccaactgggatttctcctgcttgctcagtttt 388

                                                                       
Query: 300 ccatcttgctgtctaaaccctaactgggtcgtcagaaaagctcttcagggatgtctggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccatcttgctgtctaaaccctaactgggtcgtcagaaaagctcttcagggatgtctggga 328

                                                                       
Query: 360 tgtgggcgtttacgaagagcaatttatagaacaagttcacatctacccctttatgggggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtgggcgtttacgaagagcaatttatagaacaagttcacatctacccctttatgggggg 268

                                                                       
Query: 420 acctagaatgatttgtggtttatgaggatctgaatttctagttttgacagtttctcatct 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acctagaatgatttgtggcttatgaggatctgaatttctagttttgacagtttctcatct 208

                  
Query: 480 agaccag 486
           |||||||
Sbjct: 207 agaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space:   421520
Effective search space used:   421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |