BAC Information

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BAC

Clone NameMSMg01-391D07
Chromosome16 (Build37)
Map Location 57,893,775 - 57,894,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480
Downstream geneLOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D07.T7 (MSMg01no391_d07.b1)MSMg01-391D07.TJ (MSMg01no391_d07.g1)
ACCAG493034AG493035
length847800
length of high quality
(start - end)
56 (64 - 119)286 (80 - 365)
definitionCHROMAT_FILE: MSMg01no391_d07.b1 PHD_FILE: MSMg01no391_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:20 2005CHROMAT_FILE: MSMg01no391_d07.g1 PHD_FILE: MSMg01no391_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCCTATACGACTCCTATAGTGCGACCCCCGCGGAATTCTTATGAT
TGCTCCCACCATGTGTGTTACCTGATCCACTTGTATGATGTTGTGTGTGT
GTGTGTTACTTTGTATCCACGGTGCATAGATGTATATGAGAGATATATGT
GTGTGAAGCCCCCCCCCCCCTCTCCTTTCTCCCCCCCCATTTACGCCTTT
CCCCCCCACCCCCCCCCTGGAATCTGTCCCCCCCCTCTTTTTTTCCCTCC
CCCGATATCTCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCTGCTTTCCCCCCCACCCCCCCCTCCCCCCGTGCCCCCCCT
CCCTCCCCCCCCCTTCCCCCCCCGCCTCCCTTCCCCCCCTCCCTCTTCTC
CCTCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCTCCCCCC
CCCCCCCCTCTCCCCCCCCCCCTTCTCCCCCCCCCCCCTCTCTCACCCCC
CCCCCCCCCCTCCTTTCCCTCCCCCCTCGCCCCCCTCCCCCCCCCCCCCC
CCCCCTCTCTCCCCCCCCCCTCCTTTCCCCCCCCCCCTTCTTCCCCCCCC
TACCCCCCCCCCGCCCCTTCCCCTTATTTCTTCCCCCCCCCCCTACTCCC
TCCCCCCCCCTCCCCCCTCCTTCCCCTCCTCCCCTTCCCCCCCTCCCCCT
CCCCCCCTCCCCCTCTTTTCCCTCTCCTCCCCCTCCCCTTTCTCCTTCCC
CCCCCCCCCCCCTTTCCTTCCCTCCCCCTCTTCTCCCTCCCCTCCTCCCT
CCTCTCTCCCCACCGCCCTCTCCTCCCCCCTCTCCTTCCGCCCCTTC
TCCCCCGATGATATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTTACTCCTGTAATTTTG
AGACGTTTTCCACAACTTGATGAATTTTTCTTTTTCTACCAGGTAAGTAT
AGAGAATTTGAACTCTCTTAGAAAAATCCACCTACATGAACACTTCTCAA
AGAAGTTGGAAGCTCCTGAAGAGGTCAATGAACATTCTGTGCAAGGAACA
GAAAATGTCTACTGCCAACCGAAGGTAGAGCCTGGAGGCAGTGCCTGGCC
ACTGCTGGCTCCATCTGCTTGTGTGTCTGTTGTTTAGTTTGGCAAAGGCT
GGCTCCTTTGCAGGAGGGAAATGGTTTCTACATTGGTCTGCAGAGTCCGA
GGATGTGGACTCAGAATGAGAACTGCGTTGTTCTGGCTAACTACTTTTGC
TTTATTTTTGTGGGACTTCCCCCCTCATCTTGACATTTTTATCTTACTGA
TCTCCACTCCCCCCCTGTCTCCTATTACATTACTCTTGCCCTGTCTCCTC
CGTCCTCTCTGTGCCTTGCTTTATCTGCCCCTGGCATACACAATTGTTCC
CTCCCTTTTTCTCCCCCCCTACCCTTCCCGGCCTCCACCCCTTTTTCTTT
CTTTTCCNCCCCTCCCCGTGCCCTTTTTGTCTTTTCTTTCCCCCTCCCCC
TTTTCTTTTCCCCTTTTCTCCTTTCTTTCCCTCCCTTCCCCCTCCTTTTT
TCCTACTCTTCCACTTTTCCCCCCGTCGCCCCCTCTCCTCCCTTTTCCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d07.g1 MSMg01no391_d07.g1 CHROMAT_FILE:
MSMg01no391_d07.g1 PHD_FILE: MSMg01no391_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:20 2005
         (286 letters)



>mm_chr16_57893575_57894260
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagttactcctgtaattttgagacgttttccacaacttgatgaatttttctttttctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagttactcctgtaattttgagacgttttccacaacttgatgaatttttctttttctac 260

                                                                       
Query: 61  caggtaagtatagagaatttgaactctcttagaaaaatccacctacatgaacacttctca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 caggtaagtatagagaatttgaactctcttagagaaatccacctacatgaacacttctca 320

                                                                       
Query: 121 aagaagttggaagctcctgaagaggtcaatgaacattctgtgcaaggaacagaaaatgtc 180
           |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 321 aagaagttggaagctcctgaagaggtcagtgaacattctgagcaaggaacagaaaatgcc 380

                                                                       
Query: 181 tactgccaaccgaaggtagagcctggaggcagtgcctggccactgctggctccatctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgccaaccgaaggtagagcctggaggcagtgcctggccactgctggctccatctgct 440

                                                         
Query: 241 tgtgtgtctgttgtttagtttggcaaaggctggctcctttgcagga 286
           |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgcctgctgtttagtttggcaaaggctggctcctttgcagga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)