BAC Information

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BAC

Clone NameMSMg01-391D10
Chromosome16 (Build37)
Map Location 16,461,643 - 16,462,132
singlet/doubletsinglet
Overlap geneFgd4
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D10.T7 (MSMg01no391_d10.b1)MSMg01-391D10.TJ (MSMg01no391_d10.g1)
ACCAG493040AG493041
length752759
length of high quality
(start - end)
452 (56 - 507)490 (79 - 568)
definitionCHROMAT_FILE: MSMg01no391_d10.b1 PHD_FILE: MSMg01no391_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005CHROMAT_FILE: MSMg01no391_d10.g1 PHD_FILE: MSMg01no391_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCCAACATCCGCGGAATTCTGTAGGC
TTTTTGTATATTTATGGGCATCTCTTTCTTTAGGTTAAGGAAATTTTCTT
CTATAATTTTATTGGAGATATTTACTGGCCCTTTAATTTGAAAATCTTCT
CTCTCATCCATACCTATTAACATTAGTTTTGGTGTTCTCATTGTGTCCTG
GATTTCCTGAATGTTTTGGGTTAGGATCTTTGTGAATTTTGCATTTTCTT
TTGATTGTTGTGTCCATGCTCTCTATGGAATCTTCTGCACCTGACATTCT
CTCTTCCATTTCTTTTATCCTGTTGCTGATGCTCACATCTATGGTTCCTT
TCCTAGGATTTCTATCTCCAGAGTTGTCTCCCTTTGGGTTTTATTCATTG
TTTGCACTTCCATTTTTAGATCTTTGATGGTTTTGTTTAATTCCATCACC
CATTTCCTTGCGTTTTCCTGTTATTCTTTAAGGCATTTTTGTGCTTCTTC
TTTAAGGACCTCTATCTACTCATCAGCGTTTTCCTGCAACTCCCTTACAG
ACTTTTGTGCTTTCCTCTCTCCCCACGACTACCTGCCTCCCCCTGTTTTC
CCCGCCTCCTTTAACCGATCCCCCCCCCCCCCCTCCACCATTTTTTAACC
TCCCCCCGCGCCAAAGAACCATTATCTGTAACCCCCCCCTCCCCACCCCC
TACCCCCCCCCCCTTTATATTTATTTCCACCCCTCCACCCCCTTCCCCTC
CG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGAATGGCTGGTATGCAGT
CTGCCAACACCATAGTACTCACTAAGAAGAGGTAGCGCTCTTGTGCTGAT
GTGTTCCGAGCTGCTAGTTTGAGGATTTGTCCTTCTTTTATTAGTTCATT
TGAGGGATTTACAATATCCTCTTCTTCTCCCAACATCTCATAAATTTCTA
AAAGTTTCTTCAGGTTCTCCTGGGAAGTTAGAACAAAATATAGCAAGATC
AAATATAAGAAGGTAATTCTAATTTAGCTAAAATCTGAATAATTTAATAG
ATATTGAGAGTGCTGTTACATTTGGTATAAAGCATATCAATAAAGTGAGT
CCTAAATAATAAATATTCTTTTCTGCTCATCTGCATCTGTTCATTTTGGT
TTAAATCTACAACAGTGAGAGGCTATACTATCAACTATTGTCTAGTCAGA
AGGTTCCTAGATCTTGAAAAGCCACTTACCATTTTTCTTATTGCACTATT
AGAATGGCTTGCTGCTGTAGATATAATTTCAAGTGACTCTAACTGGAAAA
AGAATAGTTATACCTGTTTGCCCTTCCTGCGTTATTACAGCCATTTCTTT
TTCCTGACCCAATACCCTGGAGGGTCCCGCATGTTCCTTCACTGTCTATA
TCTTTCCTTCCCTACCCTCTCGGTCCTCGCCTTTCTTAACCTCGCCCCGT
TTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d10.g1 MSMg01no391_d10.g1 CHROMAT_FILE:
MSMg01no391_d10.g1 PHD_FILE: MSMg01no391_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:21 2005
         (490 letters)



>mm_chr16_16461443_16462332
          Length = 890

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgaatggctggtatgcagtctgccaacaccatagtactcactaagaagaggtagcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgaatggctggtatgcagtctgccaacaccatagtactcactaagaagaggtagcgc 260

                                                                       
Query: 61  tcttgtgctgatgtgttccgagctgctagtttgaggatttgtccttcttttattagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtgctgatgtgttccgagctgctagtttgaggatttgtccttcttttattagttca 320

                                                                       
Query: 121 tttgagggatttacaatatcctcttcttctcccaacatctcataaatttctaaaagtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagggatttacaatatcctcttcttctcccaacatctcataaatttctaaaagtttc 380

                                                                       
Query: 181 ttcaggttctcctgggaagttagaacaaaatatagcaagatcaaatataagaaggtaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaggttctcctgggaagttagaacaaaatatagcaagatcaaatataagaaggtaatt 440

                                                                       
Query: 241 ctaatttagctaaaatctgaataatttaatagatattgagagtgctgttacatttggtat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatttagctaaaatctgaataatttaatagatattgagagtgctgttacatttggtat 500

                                                                       
Query: 301 aaagcatatcaataaagtgagtcctaaataataaatattcttttctgctcatctgcatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcatatcaataaagtgagtcctaaataataaatattcttttctgctcatctgcatct 560

                                                                       
Query: 361 gttcattttggtttaaatctacaacagtgagaggctatactatcaactattgtctagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gttcattttggtttaaatctacaacagtgagaggctatactatcaactattgtctagcca 620

                                                                       
Query: 421 gaaggttcctagatcttgaaaagccacttaccatttttcttattgcactattagaatggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggttcctagatcttgaaaagccacttaccatttttcttattgcactattagaatggc 680

                     
Query: 481 ttgctgctgt 490
           ||||||||||
Sbjct: 681 ttgctgctgt 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)