BAC Information

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BAC

Clone NameMSMg01-391D11
Chromosome16 (Build37)
Map Location 69,527,651 - 69,527,888
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2, EG664930, Gbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D11.T7 (MSMg01no391_d11.b1)MSMg01-391D11.TJ (MSMg01no391_d11.g1)
ACCAG493042AG493043
length792734
length of high quality
(start - end)
293 (115 - 407)238 (80 - 317)
definitionCHROMAT_FILE: MSMg01no391_d11.b1 PHD_FILE: MSMg01no391_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005CHROMAT_FILE: MSMg01no391_d11.g1 PHD_FILE: MSMg01no391_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
ATGGTATTTGCTCATGTGGCTCTAGCATACAAGCATAAATCTATTAGTGT
CTACAACATATTCAAATTGTTGCTTCTAGATATTTTAAAAATAATTTCCC
TGTATTTCTTAACATTTTTGTGGGTGGATTTTTCAGCCTGCTATGTATTT
ATTTGATCCATCCCATCAATAACCACCAAACCCAGACACTATTGCAGATG
CCAACAAGAGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGTC
TCTGCTAGTGCCTGTTAAACACAGAAGTGGATGCTCACATCATCCATTGG
ATGGAATCCCCGATGAAGGAGCTAGAGAAAGCACTCAAGCAGCTAAAGAG
GTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACAGTACTTCCAA
AGCTCCCTGGGACTAAACCACCAATCAAAGAAAACACATGGTAGGACTCA
TGGCTCTAGCTGCATATGTAGCAGAGGATGGCTTATAAAGTCATCACCGG
TAGGAGAGGCTCTTAGTCCCCGTGGAGATTCCATGCCTCCGCATAGGGAA
AAGCCCCCCTTATGAAGTGGGAGTGGGTGGGGTTTGCCCACCCAACCCCC
CTCCCCTCTCCCCTCCCCTTTTTTATCTCCCCCCCCTCTCTCTTTACTCT
CACACCACCCTCCTTCTTTTTCACTCCCCTCCCCCCCCTTCTCCTCTTCT
CCCAACCCCCCCACCCCCCCTCACCTATATCTCCACCAATCC
NNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGCTCAATATATACAGAC
ACTATAAATGACCTTGATTTATCTATAAGAGAACTTGTCTAATGAACTCT
TGGCAGTTCTATAATGTATTATCAGTGAAATCTGCTTATAGCACTTCAAG
AGGAAAAGCAAAAGAATTCATATTTGTTTATTCTTTATTTCTCTAATAAA
TCGATCCCTTTTATGGGGTGTTTCCTTTCCATAAATAGTAAAAATTATAT
AGAATCTGCTTTGAAAGATGATATTATAATTGCGGGNGAAAAAAAATGAA
CAATTTGCTGGCCTATTTTTTGAACAACTTTTTCTAAAACCCCGGGGCAA
GGGGAAAAAAAAAAAGGGGGAAAAAATTTTGGGGCGGCCCCAAAAAAGTA
ACACCCCCCTCCCTCCCCCTCTTTGGAAAAACCCTCTCGCCTCTCCAAAA
AGGGGGGCGGTGCTCCTCCTCCCACTCTCTTTGTTTTAAGCCTCCCCCCC
CCCCCCCCGGCAACAACCCTTTTCCCCCCCCCCCACTCCCCCGTGGGCGC
TTTACCACCGTCCCCCCCTTCCCCTTCCTTTTTTTCCCCCCCCCCTCCCC
CCGGGGGGCCCCGTAGCCAATCTTCTTCCCTCCCCTTCTTTCCCACCCAT
AATCTTCTCTCCCCCCCCCCTCCACACTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d11.g1 MSMg01no391_d11.g1 CHROMAT_FILE:
MSMg01no391_d11.g1 PHD_FILE: MSMg01no391_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:21 2005
         (238 letters)



>mm_chr16_69527451_69528088
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgctcaatatatacagacactataaatgaccttgatttatctataagagaacttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgctcaatatatacagacactataaatgaccttgatttatctataagagaacttgtc 260

                                                                       
Query: 61  taatgaactcttggcagttctataatgtattatcagtgaaatctgcttatagcacttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgaactcttggcagttctataatgtattatcagtgaaatctgcttatagcacttcaa 320

                                                                       
Query: 121 gaggaaaagcaaaagaattcatatttgtttattctttatttctctaataaatcgatccct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gaggaaaagcaaaagaattcatatttgtttattctttacttctctaataaatcgatccct 380

                                                                     
Query: 181 tttatggggtgtttcctttccataaatagtaaaaattatatagaatctgctttgaaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatggggtgtttcctttccataaatagtaaaaattatatagaatctgctttgaaag 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)