BAC Information

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BAC

Clone NameMSMg01-391F01
Chromosome16 (Build37)
Map Location 67,482,354 - 67,482,869
singlet/doubletsinglet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F01.T7 (MSMg01no391_f01.b1)MSMg01-391F01.TJ (MSMg01no391_f01.g1)
ACCAG493118AG493119
length733758
length of high quality
(start - end)
574 (36 - 609)516 (79 - 594)
definitionCHROMAT_FILE: MSMg01no391_f01.b1 PHD_FILE: MSMg01no391_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:29 2005CHROMAT_FILE: MSMg01no391_f01.g1 PHD_FILE: MSMg01no391_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAC
AGTATGAGTGGGACTAGATCTTACTCTTTGCCTGCCCTTGGGCTCCTTTT
CTACTAGTAAGTGGTCTTGCTCAGCTCTGATTTGAGGGTTTGCGCCTAGT
CTCAGTGTAATTTGTTATGCCCTGTACGGTTGATATCCCTGGGTGTCTTG
TGTTTTTCTGAGAGAAAGCAGAGGAAGAAGAGATCGAGTGAGAGTGGATG
TGGGGAAAAGTCCTGGGGGGAGCCGAGAGGAAGGAATCTGTGGTTAGGAT
GTATTGTATGAAAACAAAACATTTAAAAATAAAGTAGGTACTTTCTTCTA
TTCTTCAGACTAGTGTCCTCGAAATATATCACTGCTTTCATAGAAATCAA
ATTATAGTTGGATGAGAAAAAAGTGTAAAGAGAATACAGTAAGCAAAATA
AGGAAAAATTAATACACAATAGAGTATAAGGGTCTATGATTTGCAAAGAA
TGATACTCCAGGCTCAAATAATATGCAACAGTAAAGAGCATTCATTCTGC
AGAGAACCTGCATGCAGGGGTCCATCACAGTTCAGGATGGACGATAGATG
TGTAGATTCTGCTGGGTCAATTTAACAACTGGCAGGGGGATAGCAGGCGA
TTTATACCTTCCTTTTCTTTGATTGGNGGATCTATATCCGAAGCTATTGG
TGCCCGTGTGACTCATTCCGGCCTTTGGGGAAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGGTCTTTCTTATGTGTA
CCAGAGTTTATTTCTTTCTGTTTTCCACTCAGGATATTGAAAATGCTTAT
ATTAACATTTGCCTTTAGCCAAAAAGAAAATTACATTTTGTTTTGTTTCT
TGAACGTGGAGCTACTTTTGTTCCCATTGAGACTCATGACTGGCGCTGAT
TTTTATTTCCCTTCATTATCCAACTAGCATCTTAAACAATTTATTTAAAG
CAAAGCAAAAGAACCATAGGTTTTGAGCCTATAATTCAGGGCTCCGTGAC
ACAGCAGCCACCAGCCACACAAGCCAGTCAACTGTGGCCTTCCAATGTCA
GAATCTGATGGCTTATATGAAACAAAATGAAACATCTTATTCATGACTGC
TATATTGATCATGTTATGGGCTGATAAAATGCTATAGTAGATTACATACA
GTATGTTACTGAAAATCACTGGATGTGTTGTTTTGTATTTTAAATAAAGA
CTCCAAAGAGAATTTCTAGATACACATGATTGTTTGATTGTCATAATCTG
TTTTAACAGAAAGGCTTATGTACTTGACTGGTGANAGAGGCGGNNGAGGG
CCCATATACCGATAGACCAACACAGACTGATACTGAGGGCAAGGTGTGGT
CTTACAAGGGATGGATTATATCTGTTTGCAAAGCCAAAAGCCCCTACAGA
AATTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f01.g1 MSMg01no391_f01.g1 CHROMAT_FILE:
MSMg01no391_f01.g1 PHD_FILE: MSMg01no391_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:29 2005
         (516 letters)



>mm_chr16_67482154_67483069
          Length = 916

 Score =  982 bits (508), Expect = 0.0
 Identities = 514/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaggtctttcttatgtgtaccagagtttatttctttctgttttccactcaggatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 actgaggtctttcttatgtgtaccagagtttatttctttctgttttccactcaggatatt 657

                                                                       
Query: 61  gaaaatgcttatattaacatttgcctttagccaaaaagaaaattacattttgttttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaaaatgcttatattaacatttgcctttagccaaaaagaaaattacattttgttttgttt 597

                                                                       
Query: 121 cttgaacgtggagctacttttgttcccattgagactcatgactggcgctgatttttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cttgaacgtggagctacttttgttcccattgagactcatgactggcgctgatttttattt 537

                                                                       
Query: 181 cccttcattatccaactagcatcttaaacaatttatttaaagcaaagcaaaagaaccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cccttcattatccaactagcatcttaaacaatttatttaaagcaaagcaaaagaaccata 477

                                                                       
Query: 241 ggttttgagcctataattcagggctccgtgacacagcagccaccagccacacaagccagt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 476 ggttttgagcctataattcagggctccatgacacagcagccaccagccacacaagccagt 417

                                                                       
Query: 301 caactgtggccttccaatgtcagaatctgatggcttatatgaaacaaaatgaaacatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caactgtggccttccaatgtcagaatctgatggcttatatgaaacaaaatgaaacatctt 357

                                                                       
Query: 361 attcatgactgctatattgatcatgttatgggctgataaaatgctatagtagattacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attcatgactgctatattgatcatgttatgggctgataaaatgctatagtagattacata 297

                                                                       
Query: 421 cagtatgttactgaaaatcactggatgtgttgttttgtattttaaataaagactccaaag 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cagtgtgttactgaaaatcactggatgtgttgttttgtattttaaataaagactccaaag 237

                                               
Query: 481 agaatttctagatacacatgattgtttgattgtcat 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 agaatttctagatacacatgattgtttgattgtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)