BAC Information

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BAC

Clone NameMSMg01-391J17
Chromosome16 (Build37)
Map Location 15,674,516 - 15,674,921
singlet/doubletsinglet
Overlap genePrkdc
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4
Downstream gene2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J17.T7 (MSMg01no391_j17.b1)MSMg01-391J17.TJ (MSMg01no391_j17.g1)
ACCAG493339AG493340
length767790
length of high quality
(start - end)
410 (64 - 473)404 (76 - 479)
definitionCHROMAT_FILE: MSMg01no391_j17.b1 PHD_FILE: MSMg01no391_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:53 2005CHROMAT_FILE: MSMg01no391_j17.g1 PHD_FILE: MSMg01no391_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGGCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCTAGA
GTATACTTTGGTCCCAGGATCACTTTAAAGAGTTGGTAATCTTATATAAT
TATCCAGATGCTTAATAATCAAAGTAGAAAATGTTACTAGCTTTTTAAGA
GTCTTCTAATTAATATCCACAAACCAGTTTTCTTTTTAATTATCAAAATT
AGACTTTAAAACTATATATTCCATAAGCACTCTATAAACACAAAAGCTAT
AAAAGAAACACAAGAACTGTTCAGGTTTCTAAGAAACACTTACCTCAAAA
TATTTTATTTTCCTGGCATTTTTCACTGCAATAGAAAGCAATTTGTAGAA
ACCACTGATGAGTGGCAATCGTGTAGACTGCAAAATTAACTCATATGCAA
ATGAGTACACCCATGGCTCANAAAAGCCTACATGTTTCCTAGGAAGAATC
TCCCTATAAAGACAAAATAGAAAGTTTTATCCTATCTTTTTTTTTTCTTT
TTTGGGTTTTCAAGACAGGGTTTCTCTAATTCTTATTAAGCTGTAAAACT
ATGAGACCTTAAGGAATAGACCATTTCCCTTACCACACTTTTAGAACTTC
CCGCACCCTTAAGGGAATTTAAGATTTTTTTCCGGCCGGAGAACTTCCAA
CTTTCCCGAAAAAACTTCCCAAAACCCAAAGCCTAGTCTAACCGGCTAAA
AACTTTTAAAACCTTAAAAGAAATTTTTGACCTCCCTTTAAAAAAACCCC
CCTCCCTGGGCTATAAN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGATAGTGAAACTT
ATAGAGAAGAAAGTGGGGGAAAGCCTCGAAGATATGGTCACAGGGGAAAA
ATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCGAGAATTGACA
AATGGGAATTCATAAAATTGCAAAGCTTCTGTAAGACAAAAGACACTGTC
AATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTGCCTATCC
TAAATCAGATAGGGGACTATTATCCAATATATATAAATAACTCAAGAAGG
TGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTA
AACAAAGAATTCTCACCTGAGGAATACCGAATGCCTGAGAAGCACCTGAT
AAAAAATGTTTAACATCCTTAATCATCAGGGACATGCAAATTACCACAAC
CCGGAAATTCCACCTCACACCAGTCAGAATGGCTAAGATTAAAAATTCAG
GCGACAGCAGATGCTCGCGAGGATGCGTAGAAAGATCCCCCCTTGCTGCG
GGGATTGGCAGCTTGTTTTACCACCCCGCAAATTCACCCGGGCCTCCCTT
TTTTTTTATTCCCCCCCCTCCCCTACCGTTTCCCCATCCCCCCCCCCGCG
CCTTTTTTTCCCTTTTTCCTTTCTTCCTTACCTTCCCCTCCCTCATCTCC
TCTTCGCCCCCCCCTCTTAACACACCGCACCCTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j17.b1 MSMg01no391_j17.b1 CHROMAT_FILE:
MSMg01no391_j17.b1 PHD_FILE: MSMg01no391_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:53 2005
         (410 letters)



>mm_chr16_15674316_15675125
          Length = 810

 Score =  756 bits (391), Expect = 0.0
 Identities = 402/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggatcactttaaagagttggtaatcttatataattatccagatgcttaataatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 606 ccaggatcactttaaagagttggtaatcttatataattatccagatgattaataatcaaa 547

                                                                       
Query: 61  gtagaaaatgttactagctttttaagagtcttctaattaatatccacaaaccagttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtagaaaatgttactagctttttaagagtcttctaattaatatccacaaaccagttttct 487

                                                                       
Query: 121 ttttaattatcaaaattagactttaaaactatatattccataagcactctataaacacaa 180
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 486 ctttaattatcaaaattagactttaaaactacatattccataagcactctataaacacaa 427

                                                                       
Query: 181 aagctataaaagaaacacaagaactgttcaggtttctaagaaacacttacctcaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagctataaaagaaacacaagaactgttcaggtttctaagaaacacttacctcaaaatat 367

                                                                       
Query: 241 tttattttcctggcatttttcactgcaatagaaagcaatttgtagaaaccactgatgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttattttcctggcatttttcactgcaatagaaagcaatttgtagaaaccactgatgagt 307

                                                                       
Query: 301 ggcaatcgtgtagactgcaaaattaactcatatgcaaatgagtacacccatggctcanaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 306 ggcaatcgtgtagactgcaaaattaactcatatgcaaatgagtacacccatggctcaaaa 247

                                                         
Query: 361 aagcctacatgtttcctaggaagaatctccctataaagacaaaata 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagcctacatgtttcctaggaagaatctccctataaagacaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)