BAC Information

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BAC

Clone NameMSMg01-391M16
Chromosome16 (Build37)
Map Location 17,923,288 - 17,923,521
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl
Downstream geneSlc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M16.T7 (MSMg01no391_m16.b1)MSMg01-391M16.TJ (MSMg01no391_m16.g1)
ACCAG493480AG493481
length774783
length of high quality
(start - end)
238 (68 - 305)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no391_m16.b1 PHD_FILE: MSMg01no391_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:07 2005CHROMAT_FILE: MSMg01no391_m16.g1 PHD_FILE: MSMg01no391_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTAAANGAANCCCAATTTCACACACGCGCGGNATTNCAGGAGGTT
CCCCAAACCCGCAGAGCTGCAGCACACACTCCTCATAGAACTGTGCCAGG
AGGAACAATAGCCTCAGAGTGAGGACAGGGCTTAGACAAGCCCACAGAGG
GACAGAGCAGGACCGCAAGCTGATATTTTGTGCCCCATTCTAAATTCTGT
GGAGCTCCTCTTACAGCTGTATAGGTACACCCTGAGATTTTCTATGTATG
CCCCTGTGCAGGTGATAAAATGGCAAATCATAGTTTAATATCCAAAGAAA
TCACATCCTAACATTTGAAAAATGCTTGTTTCCTGCATTCTAAAAAAAAC
CCCAAACTTTAAGTAGAGAATCAAGAAATTCAGAGTCCAAGCTTGCATAT
CCCCCCCGCCGCCCCAGCCCAGTGACTGTCTCATTTTAGGCAAATAAAAG
AATTCTTGCTTTCCTTTGTATCCCTCTCAGCACTCAGAAAACAGTCTCAG
TTTAAGATCCCCATTTTTTTTCTGACGCTGGCTTTTAATTTCCTGCCTCA
CAGACTCTTGGATTTACCATTCCGTAGGCCCCCCGCATATAATTACAGCC
CGCCGCACCACCCACTAGTCTCTCCCCGACCCGGGACCCCCTATTTTCTT
TTATCTAGAATGGCAGAAACGGGCCATCGCCCCCTCCTAAAAAGTCCCCT
GGGCTAAAATCCCGCCCGCCCCCCCCCCTCTTCTGTCATTACCCCCCCCC
CTCCCCCCCTGGACCTACTCTAAG
CCGATATAGTGGGAGGCCTGGNGGNCGCCTGTTTCTCAAATTTAGGTGAA
CTATAGAAGTANCAGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGGGTTCTTTATATA
TATTGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTTCTTTTGCCTTGC
AGAAGCTTTGCAATTTTATGAGGTCCCATTTATTGATTCTAGGAGAGTTA
TTAATGAAGATTTTCCTGATTAGTGAGTTGTCTGTTCTTACAGGGAGGAT
GGAGGTTCCCGACAGCAGGCTTTGTTAAGAAGTAGTATATACCTGGTTAG
TAAGTAGCATACTACGCGCCTGTGGTCTCAGGTTGCCTGGGATTCCTGGT
GAAGGGGGCTGGTGACGTTCCCCCCTCCCCTCCCCCCCCCTCCCTTTCCC
CTATTCCCCCGCCCCCTCTTTTTCCGTTCTCTCTCCTCCCCCTCCTTCTT
TCCTCCCTTCTCTCCCTCTCCTCTTCTTTTCCCCCTCCCCCCTTTTCTCC
GCCTTCCCCTTTCCCCTCCCCCTTCTCCTTTTTTCATTCGCCTCTACTTT
TTTTTTTTTTTTTTTTTTTTGCCCTTACCTTCCCCCCCCCCCCCCCCTTT
TTTTCCGCTTCCCCCTTTTTCCCCCCCCCTCCCCTTTCTCCTCCCTTTTC
TTCCCTCCTTCCCTTTCCCCCCTTTTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m16.b1 MSMg01no391_m16.b1 CHROMAT_FILE:
MSMg01no391_m16.b1 PHD_FILE: MSMg01no391_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:07 2005
         (238 letters)



>mm_chr16_17923084_17923721
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcacacactcctcatagaactgtgccaggaggaacaatagcctcagagtgaggacagggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcacacactcctcatagaactgtgccaggaggaacaatagcctcagagtgaggacagggc 379

                                                                       
Query: 65  ttagacaagcccacagagggacagagcaggaccgcaagctgatattttgtgccccattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 ttagacaagcccacagagggacagagcaggaccgcaagctgatattttgtgacccattct 319

                                                                       
Query: 125 aaattctgtggagctcctcttacagctgtataggtacaccctgagattttctatgtatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaattctgtggagctcctcttacagctgtataggtacaccctgagattttctatgtatgc 259

                                                                 
Query: 185 ccctgtgcaggtgataaaatggcaaatcatagtttaatatccaaagaaatcaca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccctgtgcaggtgataaaatggcaaatcatagtttaatatccaaagaaatcaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)