BAC Information

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BAC

Clone NameMSMg01-392F14
Chromosome16 (Build37)
Map Location 88,438,462 - 88,616,319
singlet/doubletdoublet
Overlap geneEG622373, Cldn17, Cldn8, Gm312
Upstream geneORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream gene2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F14.T7 (MSMg01no392_f14.b1)MSMg01-392F14.TJ (MSMg01no392_f14.g1)
ACCAG493904AG493905
length779763
length of high quality
(start - end)		498 (49 - 546)425 (70 - 494)
definitionCHROMAT_FILE: MSMg01no392_f14.b1 PHD_FILE: MSMg01no392_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:50 2005CHROMAT_FILE: MSMg01no392_f14.g1 PHD_FILE: MSMg01no392_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,615,912 - 88,616,319)(88,438,462 - 88,438,885)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATAATTCTGTTTTAATGAGTTGAAAAGACTGCACTGGCTCA
TTAAACGAAGTGTTTTTCTGACTCTTGGGAAGATGTATTTCTTTTGGCTG
ATGGCTAAGGAAGTTTATTCCTTGCACCTTATTATTGCCCTGGATATAAA
GTACCAACGCTACAGACCCGGAAAGACCATCGGATTCAGCTGTATTTCCT
AATAGAGTATTCATTTTCTCTGACTGCTGCAGCAAATTACCACACACTTT
GTAGCTTAAAATAATAGAAACTTATTGTCTTTGGCTTCTGGAGGTTAAAA
GTGTAAAGTCAGTCTTAGATTTAGGTGTTGACCCCAAATCAAGTCAGCAG
TGCTGATTCCTATAGTGTGTCCAGTGGAAAATCCGTCCCTTCATCTCTAG
TTTTTAAGGGTTGTTGGCATTGCTTAGTGTGGGGCCAATGAATTCCAATA
CATTTCTGTTGCCACTTTGAATGCCACTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTNNNTNNNNCCCNCCCCTTTCCCCCCTTCTTCCCCCCCCCCCC
TCTTCTCCGCTTCATTTTTCTCCTTTCTCCTCCTATTTCTCCCCCCTTAT
TCTTTTTTTTTCTTTCTTCCGTCCCACCCATTTTTTCCCCCCTTTCCCTT
CCCCTTCCTACTCCTGCCCTTCTTCTCCCCCTCTCTCTGCCTCCCCCACT
TCTAAATCCCTTTCCCCCCTTCCCCCCCG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTGCCTGTTCTACATTTCATCGAACTGGAT
CAGCTTCCGGATATTCAAATTTGGTCATTCAGATTTTTAAAAACCTTTCT
TGAGAATTCGTTTGTCTCTGTCTGGGTTGATCTTCATCAGGTTTTCGTTT
ATATCTTTATCACTTGTATCTGCACCTACAGCCCCCTCTACAACTCTATC
TATATGACTGTACTTCTGTCTGTCTCTTTTCCTTTTCTCTTCATTGAGAA
ATCATCTCTAGCCTAAAGAGTTTTACTTCCTGGTGGGTGACTGATCTTTG
GCCGTGGGAGTCTCACTGTAGCTGTGGTTAGGGAAATCACACTCTTTCAT
CTTTGACTACATCTAAAGGAAAGAAGAATTGATCTATTTTAGCAGATGTC
ATGAATTCCCCTGGGGAAGAAAAAGTACTTGTTTTCAAAGTTCCGAAGAA
TGAATATATATATATACATATACATCTATATACACATATATATATATACT
TACGGCCTTACACCCCCCCCTCTTTTGTCCCTCTTCTCTTCCTTCCCGTC
CTCCCCTTCCTCTCTTTCCACATTTCCCTCTCTTCCCCGTCTTTTCTCTT
CCCCGCCCCTAACGTTTCTGTCGCTTTCCCCCCCCCCGCCTCTCGTTTCT
CCCCTCTTCTTCCTCCCCATTTTTTTCCGCTCCCTCCGTCCTTCCTCTTC
CATTTTCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f14.b1 MSMg01no392_f14.b1 CHROMAT_FILE:
MSMg01no392_f14.b1 PHD_FILE: MSMg01no392_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:50 2005
         (498 letters)



>mm_chr16_88615912_88616809
          Length = 898

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataattctgttttaatgagttgaaaagactgcactggctcattaaacgaagtg 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaattccataactctgttttaatgagttgaaaagactgcactggctcattaaacgaagtg 349

                                                                       
Query: 65  tttttctgactcttgggaagatgtatttcttttggctgatggctaaggaagtttattcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttttctgactcttgggaagatgtatttcttttggctgatggctaaggaagtttattcct 289

                                                                       
Query: 125 tgcaccttattattgccctggatataaagtaccaacgctacagacccggaaagaccatcg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgcaccttattattgccctggatataaagtaccaacgctacagacccggaaagaccatcg 229

                                                                       
Query: 185 gattcagctgtatttcctaatagagtattcattttctctgactgctgcagcaaattacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gattcagctgtatttcctaatagagtattcattttctctgactgctgcagcaaattacca 169

                                                                       
Query: 245 cacactttgtagcttaaaataatagaaacttattgtctttggcttctggaggttaaaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cacactttgtagcttaaaataatagaaacttattgtctttggcttctggaggttaaaagt 109

                                                                       
Query: 305 gtaaagtcagtcttagatttaggtgttgaccccaaatcaagtcagcagtgctgattccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtaaagtcagtcttagatttaggtgttgaccccaaatcaagtcagcagtgctgattccta 49

                                                           
Query: 365 tagtgtgtccagtggaaaatccgtcccttcatctctagtttttaaggg 412
           ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 48  tagtgtgtccagtggaaaatccgccccttcatctctagtttttaaggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_f14.g1 MSMg01no392_f14.g1 CHROMAT_FILE:
MSMg01no392_f14.g1 PHD_FILE: MSMg01no392_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:50 2005
         (425 letters)



>mm_chr16_88438262_88439086
          Length = 825

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcctgttctacatttcatcgaactggatcagcttccggatattcaaatttggtcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgcctgttctacatttcatcgaactggatcagcttccggatattcaaatttggtcatt 260

                                                                       
Query: 61  cagatttttaaaaacctttcttgagaattcgtttgtctctgtctgggttgatcttcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatttttaaaaacctttcttgagaattcgtttgtctctgtctgggttgatcttcatca 320

                                                                       
Query: 121 ggttttcgtttatatctttatcacttgtatctgcacctacagccccctctacaactctat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ggttttcgtttatatctttatcacttgtatctgcacctacagccccctctacaactctgt 380

                                                                       
Query: 181 ctatatgactgtacttctgtctgtctcttttccttttctcttcattgagaaatcatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatatgactgtacttctgtctgtctcttttccttttctcttcattgagaaatcatctct 440

                                                                       
Query: 241 agcctaaagagttttacttcctggtgggtgactgatctttggccgtgggagtctcactgt 300
           ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agcctaaagaactttacttcctggtgggtgactgatctttggccctgggagtctcactgt 500

                                                                       
Query: 301 agctgtggttagggaaatcacactctttcatctttgactacatctaaaggaaagaagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgtggttagggaaatcacactctttcatctttgactacatctaaaggaaagaagaat 560

                                                                       
Query: 361 tgatctattttagcagatgtcatgaattcccctggggaagaaaaagtacttgttttcaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tgatctattttagcagatgtcatgaattcccctggggaagaaaaagcacttgttttcaaa 620

               
Query: 421 gttc 424
           ||||
Sbjct: 621 gttc 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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