BAC Information

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BAC

Clone NameMSMg01-392G02
Chromosome16 (Build37)
Map Location 42,944,341 - 42,944,584
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392G02.T7 (MSMg01no392_g02.b1)MSMg01-392G02.TJ (MSMg01no392_g02.g1)
ACCAG493928AG493929
length801793
length of high quality
(start - end)
143 (71 - 213)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no392_g02.b1 PHD_FILE: MSMg01no392_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:53 2005CHROMAT_FILE: MSMg01no392_g02.g1 PHD_FILE: MSMg01no392_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGATTTACAACAGAAAGGAGAAAAAATTCAGTGAAATTACA
AACATCATTCACTATGCCAATAAGAAAATCAGCAACAGATAGAAATAATT
AAGGGGAACCAATGAAGAAATGTGTGTGTATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTCCCCNCCCCCCCCCCCCCCAACCACCCACAACCCCCA
CCTCTTTTTCCCCCCCCCTCCCTCACCCTTTTTTCCTCCCCTCCCCCTCC
CCCTCCCTTTCCCCCCCCCTTTTTTTTTTTCCCCCCTTTCCCCTCCCCCC
CCTCCACCCTTCCTTTCCCCCCCCTCTTCCCCTTTCCCCCCCCCCCCCTT
CCTTTTTTTTTCTTCTTCCCCCCCCCCCCCCCCTTTTTCTTTCCCCCTTC
CCCCTTTTTCCACTCCCCCTTCCTTCTACCCCCCCCCCCCTATTCCTTTC
TCCCCCCCCTTCCTCCCTTCCCCCCCCCCCCTTTCTTTCCCTCTCCCTTC
TTTTCCCCCCTCCTCCCTCTTCTCCCCCTTTTTCCCTCCCTTTCCCCCCC
CCTCTCCCCTCTCTCCCCCCCCCTTTATTTTTCACTCCCCCCCTCCCTCT
TCCCCCTCCCCCCCCTCTCCTTCCCCCCCTCTTCTCTCTCCCCCCATATT
TCCCCCTCTTTTCCCCCCTTCTCCCCCCCTTCTCCCCTTTTTCTCTCCNC
TCCCTCCCCTCCTCTCTTCTTTCCTTTTCCCCCCTTCTCCCCCCCCCCCC
N
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATCTTCCATCTTCATTCTCAGAAACAAC
TTAGAGCCATGATTCCCAGTCCTCTCCTTACTGTTCCTCTCCCCACCTTC
AGTTCCTAACTCTTGTATTGTTCTTTTCTTCCCATCTACTCCTTTCTGGT
TATAGCATCCCCTGGAGTTATTTCTCAGAAAGGAAAGGATGTGTATGTGT
TAGAGCATGTGCCTAAAATATGTTTTAACTCAGACTTGATTAGACATTTG
ACTGGGTACAGAGCGACTTCTTAAACATAATTTTATCAGAATTTTACAGC
CATGATTTCTACCTTTGATTGGTCCCATTCCCATTTTCATGATGACATAC
AGTTTTATATTTTTTTCTCTGGAATTTTCTGTTATCTGCTCATTAACAGT
ATTCTACAAGTTTCTATGCACTTACCTTTGTGGCTATTCCACCCATATCC
TACGGCCACCCCCCTTACTCTTTTTTTCTTCCCTTTTGTCCATTCCTCTC
ATCTCAACCTTCTTTCTTTCATTTCCACTCTCTATTTTCTATCCCTTCTG
TCTTTTTTTATCCATCATACCTCCCTTTTGCCTCCACTTTTTTACTTTCG
CACCACACCCCTGGCATATCTCTCTTATTTCCCCCCCTTATATATTTTCC
CTCCCCCTCCCTCATTTCTTCTTTTTTCCTCTCAACCTTCACTATTCCCC
CCCTCTCGCACCCTCTTTCTATCTACTATTTTTTTTCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_g02.g1 MSMg01no392_g02.g1 CHROMAT_FILE:
MSMg01no392_g02.g1 PHD_FILE: MSMg01no392_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:53 2005
         (244 letters)



>mm_chr16_42944141_42944784
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcttccatcttcattctcagaaacaacttagagccatgattcccagtcctctcctta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ccatcttccatcttcattctcagaaacaacttagagccatgattcctagtcctctcctta 385

                                                                       
Query: 61  ctgttcctctccccaccttcagttcctaactcttgtattgttcttttcttcccatctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgttcctctccccaccttcagttcctaactcttgtattgttcttttcttcccatctact 325

                                                                       
Query: 121 cctttctggttatagcatcccctggagttatttctcagaaaggaaaggatgtgtatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctttctggttatagcatcccctggagttatttctcagaaaggaaaggatgtgtatgtgt 265

                                                                       
Query: 181 tagagcatgtgcctaaaatatgttttaactcagacttgattagacatttgactgggtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagagcatgtgcctaaaatatgttttaactcagacttgattagacatttgactgggtaca 205

               
Query: 241 gagc 244
           ||||
Sbjct: 204 gagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)