BAC Information

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BAC

Clone NameMSMg01-392I14
Chromosome16 (Build37)
Map Location 92,549,330 - 92,692,111
singlet/doubletdoublet
Overlap geneRunx1
Upstream geneIfngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I14.T7 (MSMg01no392_i14.b1)MSMg01-392I14.TJ (MSMg01no392_i14.g1)
ACCAG494048AG494049
length787843
length of high quality
(start - end)
244 (77 - 320)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no392_i14.b1 PHD_FILE: MSMg01no392_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005CHROMAT_FILE: MSMg01no392_i14.g1 PHD_FILE: MSMg01no392_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,549,330 - 92,549,572)(92,691,868 - 92,692,111)
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCC
GCGGAATTCAGCTCTTACGCAGTTACATAAATGAACAACACCACCACCAC
CACCATGGATAACAGCCAAGCCAAGGCTGCTCCTTTAGAAGAAAAGACCA
TTTTTAATAAAGAGTCTGGAAGATGCTGCACACAACTCTAAGGCCCAAAT
TCTTCCCTGTTCTCAGGTTTCATCCTCGAGATGGCTGGCTTTGTCAGCTT
GTCACAGTCTAGAAGCACCTGGGAGGAGAGTCTCAGTGAGGGGTTGTGTG
CTGGCTGGTTTTGGGTGTCTACTTGACTCAGGCTAGAGTTATCACAGAGA
AAGGAGCTTCAGTTGGGGAAATGCCTCCAAGAGATACAGCTGTGGGGTAT
TTTCTCAATGAGTGACCACCCCCGCGAGGGTCCCTGGTGGGTGGCACCAT
CCCTGGGTTTGGCCTCCATAAGAGACCACCCCGAGTAACCCCCGGCCCGC
ACCCCTACCAAGGAAAACCCCTCCATGGGTCTCTCGCTTCGCCTCCAGCT
TCCCTGACCCGCCTTGACCCCCTGCCCTGGCCTCTCTTTCGCCGCCCCGC
CTCACCTGCGGCCGCCCCTACCCCTTTTACACTCCCCCCTCCTCCTTCCC
TCCCCCCCCCCCTATTCCCTCTCTTCTCGCTCCCCCCCGTATTTCCCCCT
CTCTCACCTCTTTACCCCCTCTCCCGCTGGTTTTCACTCCCCTCCCTCCT
CCCTCCTTCGCCTTACCCCCCCTCTCCACCCCCTTCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAACATCAACAAGCTTTTCTTGGCCACCATG
GTCCTCTCGTGCTGTAGACGAGGGGGCCTCATGGGTTTGACCTCTTGGTA
ATGAGGGATCCCTGGAACAACCGTGGTAAACTGAGGCACGGTGGGGCACA
GTGGGAATTCATGACTTGACGTGCCTTTGGGCGCTCTGGAACAGGATTTA
TTCATTTTGGCCTCTTAGGAGATATGGGCCCCAACAGTCAGGCATTCAGA
CTGGAAGCCCGGATGGCTANCTTTGCCCTCGGAGCCCAGTGGGTGTTGAG
ATGATCTGTTTAGGCCTAGGTCTCCACAGGGAGATGACTGCCAGGAAGTG
AACCACCCTCCCCCACGTCACCTCATTCTTGTGATGCACCTGTGTAGAGG
TTAATGATCCCTTTGATGCCAGGGATGGGGGCAAACTTCCCCCTTTTCCT
CTTTCTCCGGCTTCCCCTCTTTGCCGTTCTTTCCCTCCCTCTTTCCCTCC
GTCCCTCTCTCCCTTCTTCCCCTCTCTTCCCTCCTTTCTCCTCCCCCCCC
TCCTTCTTCTCCCTCGCTTTCTCCCTCCTTCCCCCTTCCCTCCCCTGTTC
CTCTTTTTCCTTCTTTCTCCTCTCATCCTCCCCCCCTCCTTCTCTTCTTT
TTTTTTTCTTCTCTCACAATACTCGTCCCTTTTTCATCCCCGCCCCTCAC
GGTTCTTCTCTTCCCCCTCTTCATTTCCTTCCTCCCTCTTACTTTCCCCT
TCCCCTTCTCCTCCCCTTACCTCTTCCTCTTTCTATCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i14.b1 MSMg01no392_i14.b1 CHROMAT_FILE:
MSMg01no392_i14.b1 PHD_FILE: MSMg01no392_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:05 2005
         (244 letters)



>mm_chr16_92549130_92549773
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatgaacaacaccaccaccaccaccatggataacagccaagccaaggctgctccttt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatgaacaacaacaccaccaccaccatggataacagccaagccaaggctgctccttt 260

                                                                       
Query: 61  agaagaaaagaccatttttaataaagagtctggaagatgctgcacacaactctaaggccc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 agaagaaaagaccatttttaataaagagcctggaagatgctgcacacaactctaaggccc 320

                                                                       
Query: 121 aaattcttccctgttctcaggtttcatcctcgagatggctggctttgtcagcttgtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattcttccctgttctcaggtttcatcctcgagatggctggctttgtcagcttgtcaca 380

                                                                       
Query: 181 gtctagaagcacctgggaggagagtctcagtgaggggttgtgtgctggctggttttgggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gtctagaagcacctgggaggagagtctcagtgaggggttgtgtgctggctggttttaggt 440

              
Query: 241 gtc 243
           |||
Sbjct: 441 gtc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_i14.g1 MSMg01no392_i14.g1 CHROMAT_FILE:
MSMg01no392_i14.g1 PHD_FILE: MSMg01no392_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:05 2005
         (244 letters)



>mm_chr16_92691668_92692311
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatcaacaagcttttcttggccaccatggtcctctcgtgctgtagacgagggggcctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 aacatcaacaagcttttcttggccaccatggtcctcttgtgctgtagacgagggggcctc 385

                                                                       
Query: 61  atgggtttgacctcttggtaatgagggatccctggaacaaccgtggtaaactgaggcacg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 atgggtttgacctcttggtaatgagggatccctggaacaaccatggtaaactgaggcacg 325

                                                                       
Query: 121 gtggggcacagtgggaattcatgacttgacgtgcctttgggcgctctggaacaggattta 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 gtggggcacagtgggaattcatgacttggcgtgcctttgggcgctctggaacaggattta 265

                                                                       
Query: 181 ttcattttggcctcttaggagatatgggccccaacagtcaggcattcagactggaagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcattttggcctcttaggagatatgggccccaacagtcaggcattcagactggaagccc 205

               
Query: 241 ggat 244
           ||||
Sbjct: 204 ggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)