BAC Information

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BAC

Clone NameMSMg01-392M11
Chromosome16 (Build37)
Map Location 48,922,967 - 48,923,206
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg
Downstream gene2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M11.T7 (MSMg01no392_m11.b1)MSMg01-392M11.TJ (MSMg01no392_m11.g1)
ACCAG494233AG494234
length746782
length of high quality
(start - end)
239 (80 - 318)54 (184 - 237)
definitionCHROMAT_FILE: MSMg01no392_m11.b1 PHD_FILE: MSMg01no392_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:25 2005CHROMAT_FILE: MSMg01no392_m11.g1 PHD_FILE: MSMg01no392_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGATCAATAAXXXXXXXXXXXXXXXXXXXXXXXTTCCCACCTCGCTCC
GCGGAATCACTCTCCGCACCACCCTGGCCTCGAACTCAGAAATCCACCTG
CCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGC
TTTGATCTACTTTTGACAAGTATATATACTATGATTTCTTTAACATGGTG
AATCTCAAGACTGAGATAAGGGGGAAATAATTTATTTAAGATGACAGTTA
TTTATTCTACAAAGTAGCATTCTGAGAGTGTAACGCAGGTAGGTCTTCTG
TCTTCTAGCTGGAGTTCCTTTTATTATTTTCACTTGCATCCATTTTAGGA
TTTATTTTGTATTTAAAAAAAGTTGCACTTACTATATCTTAAATAATTCT
CTTCAAATTATACCCCCCCCCCAGTAAGTTAAGTTTTCTAGGACTATAGT
ATTGGGTTTATAAAATACAAAGATATGGTAGTGATATCATATGGTGGAAA
GAGTTTGACTTGCCTCTTTGATGTGATTAAGATGTTTCCAATTACTGACA
ATTATTTTAACTTACAAATTAGTATTCCTTTTCACTCTTTAATCTTTCCC
AGCTTAAAACTTTAATTTACCTTTATGCTTCCCCAAGAAAAGGCGGGTTT
TTATTTTTTTCCGCAACCCCCACCTCTGCCCGATCTCCCCCCCACCCACC
TTAACCTTTCCATGACACCCCCTCAACCCCCTACCCCCCCCATCGT
CATGAAGCGCGAGGCCTGGNGGNCGGCCGGCCTAGTCATTTCGGTGAANN
ANAGAAGGATTTCAACCATCCCCGAGCCTTCCTTCCAACCTGGNTAGNGA
GGAAGGGGTGGAGGGACGGGCTCTCAGTGGCTGCTGTACCTCCTCACTCA
CCCCTTCCCTTTGTATCAGGAGATAAACCAGTCAGTTTCAGGGAGTGGCC
CTCCCATGCTTTCTCTTGAGGTTCTTAGACACTTCTCAAGTTGTTAGATA
TTTTTTTCTCATTGCGTTAGTTCCAACAACATCACTTTTCCTTATCGAAA
GGTGGTTCCAAGACTACTTAATGATTTTGGGGAAACCCACCGCCAAAGCA
GGGCGGGTTTTTTCTTGCCGACTACCGGGGGCCACGTCGTCCTTTCCCAT
ACACCCCCACCCCCCCCCCCCCCTTTTTTTTATCCTCACCCCTCTCCCCT
CCCCCCCCCCCCTTTCCTCGCTCCCCTCCTTCCTCCCTCCCCCCTTTCTC
CCCTATCCACGCTTTTCCCCTTTTTCACTATCCGCCAGCCGCCCCACCCG
CCACCCCGGGACAGCCCCCCCCCCCCTCCCCCCCCTTTCTCCTCCCCTCA
CTTCCTCCCCCCCCCCCTTTCCATCTTCCCGTTACTCTTCGCTCTCTCCC
TCCCGCCCCATTCTATCCCCCCTCCCCCCCCCCCTTTTTTTTCTCTTTTC
CCCCCCTCCTTGCCCCCCCCTCCCTCCTCTACCCTCCTTTACCCCTCTCA
CCCTTTCCACCCACCCCCCTCCTTCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m11.b1 MSMg01no392_m11.b1 CHROMAT_FILE:
MSMg01no392_m11.b1 PHD_FILE: MSMg01no392_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:25 2005
         (239 letters)



>mm_chr16_48922695_48923333
          Length = 639

 Score =  381 bits (197), Expect = e-110
 Identities = 229/243 (94%), Gaps = 7/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgaactcagaaatccacctgcctct----gcctcctgagtgctgggattaaaggtgtgc 56
           |||||||||||||||| |||||||||       ||| |||||||||||||||||||||||
Sbjct: 512 tcgaactcagaaatccgcctgcctctttaa---tcccgagtgctgggattaaaggtgtgc 456

                                                                       
Query: 57  gccaccacgcccggctttgatctacttttgacaagtatatatactatgatttctttaaca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gccaccacgcccggctttgatctacttttgacaagtatatatactatgatttctttaaca 396

                                                                       
Query: 117 tggtgaatctcaagactgagataagggggaaataatttatttaagatgacagttatttat 176
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||
Sbjct: 395 tggtgaatctcaagactgagataagggggaaataatttatttaaggtgacagttaaacat 336

                                                                       
Query: 177 tctacaaagtagcattctgagagtgtaacgcaggtaggtcttctgtcttctagctggagt 236
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 335 tctacaaagtagcattctgagagtgtaatgcaggtaggtcttctgtcttctagctggagt 276

              
Query: 237 tcc 239
           |||
Sbjct: 275 tcc 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)