BAC Information

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BAC

Clone NameMSMg01-393A07
Chromosome16 (Build37)
Map Location 79,390,719 - 79,391,291
singlet/doubletsinglet
Overlap genenone
Upstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393A07.T7 (MSMg01no393_a07.b1)MSMg01-393A07.TJ (MSMg01no393_a07.g1)
ACCAG494416AG494417
length7741,169
length of high quality
(start - end)		594 (15 - 608)---
definitionCHROMAT_FILE: MSMg01no393_a07.b1 PHD_FILE: MSMg01no393_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:46 2005CHROMAT_FILE: MSMg01no393_a07.g1 PHD_FILE: MSMg01no393_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGGTAGAGGATCCGCGGAATTCTCTCTGGTT
ACATGTATAGGGAACACATGGAGGTGGAAAAAAGTCAGGGTTTGGTTTCT
TCTACAGCCTTTCCTACTAGTAGAATGGCTTGGTTACTGTTTTTGTCAAT
GTCAGATCCCAGTGTCCATTGATGAAGGGGTGCGTGGACAATGTGAGGAT
CTCTTACCAGTTCCTGCTAATTGTCATGTCTTTAAAATAGGTACCCAATC
AAGTCATTCTTACATAAAACCTCTGGGATATTATTACATTTTTTATTTCA
GATTACTGTTGCTATACACACAGAGCTAAGGCAATACAATTAAGAAAAAA
TTCAAGGTGGCATTTGAAGATGTTGATATAATCTGATTATAAGTAAAAAG
AGAAAACATTGTTGGGCAGTGGTGGCGCAAGCCTTTAATCCCAGCACTTG
GGAGGCAGAGGCAGGCGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAG
AGTGAGTTCTAGGACAGCCAGGGCTACAGAGGGGAATTTGAACAAAAATA
TTAAACATAACAATGTTGCATAAACAGTATTAAGATCATAAAACTTATTT
TTTTGCAAGAAGTAAAAGAAACATTTTCATATATAATAAAAATATAGTCA
AATGGTGAAAAACATACTCGCAGTTCTGTCCCAATTACCTCCCTAATTAT
TCCATATTTTTACATTTTTAATTTCCGGCCCTCCGGAGAAAATCAGATTT
ATTCCGATTCTTGAATTTTTACCG

TTATTTATCTCTTCTATAGAGCCGACAAAATACCACACACCATTCCAAGC
AAGAAAAATCTCACGCCGCCAACACCACACAACCTTCACACATAATAAAC
GCCCTAATTACACTAATAACGACCATAAACACGCTCTACTAACACTCTCA
CTAAACTACATTACATTTCATATCCTTCTACATCTATATTACCCCTACTA
GCTATATATTTAACAGCAACTAACTAATATGACTCAGTACTCTCACCCTA
TCACGAGCTACTTCGTACTCGATCGTCGTAGATTCATAACCGCCGTCTTC
TTCGCGTACCCAGTTATCATACTATCTCTCTCTCTCCTCATCTTTCTCCA
CACATAACCAAACACATACACTCCCACTCACTCACCTATATATTAACCAT
ATAATATTAGTACACAAATATCACACATACACTACATCATACACCATACG
CATTAATTAGTATACCCATCATTTCTCTAACACGAGCATATCATCCTATC
ACTTCTTACTCTACCTCATTTCTTTTCTCTATCATACACCATTACTTCTC
TAATATTCACCCCCTCTCATCACCCTATTTATCCTCCCTTCACCTCTCAT
CCTCTTCTTTCTAACTACTCATCTATACATTACCCTTCTCCTTATCACTA
CTATCACTACTTTATACTCACTCTCAGTCCACATGTCTTTCTTCCTTACC
TTTTCTTTCACCCGCTTCATTATTATAACTTATCCCCCTTCGTATATTAC
TATTCATCTTATATTACCACATTCATCTCATTTATATCATATACTATCCC
TCTATTCGTATATTATTTATCAATATATAACCACCTAATAAATTATATAT
ACACCATCTCTTACTATCATAATCTCTCACTCATTACACCACCTCTNATC
CTCCTATCTTCTACTCACACACAAATTTCATATACTAACTACAATCCATC
TGCCATGCCGATACTAATACATAATCTAATGTCCATTCCCGCTATTACTA
TCATCTCCTTCTCATGATATCTCACAATCTCACTTTACACAATCTCCCTA
TTAATACACATCATATATACCTCTCTACGCACCCTTCTTCTATATCAACA
CCACTCACCATGATATCAATTAATCCTCAACATCTTTCTACTCCATTATC
TCTATATATATCAATTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_a07.b1 MSMg01no393_a07.b1 CHROMAT_FILE:
MSMg01no393_a07.b1 PHD_FILE: MSMg01no393_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:46 2005
         (594 letters)



>mm_chr16_79390498_79391491
          Length = 994

 Score = 1077 bits (557), Expect = 0.0
 Identities = 569/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaattctctctggttacatgtatagggaacacatggaggtggaaaaaagtcagggtttgg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaattctctctggttacatgtatagggaacacatggaggtggaaaaaagtcagggtttgg 281

                                                                       
Query: 82  tttcttctacagcctttcctactagtagaatggcttggttactgtttttgtcaatgtcag 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tttcttctacagcctttcctactagtagaatggcttggttactgtttttgtcaatgtcag 341

                                                                       
Query: 142 atcccagtgtccattgatgaaggggtgcgtggacaatgtgaggatctcttaccagttcct 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atcccagtgtccattgatgaaggggtgcgtggacaatgtgaggatctcttaccagttcct 401

                                                                       
Query: 202 gctaattgtcatgtctttaaaataggtacccaatcaagtcattcttacataaaacctctg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctaattgtcatgtctttaaaataggtacccaatcaagtcattcttacataaaacctctg 461

                                                                       
Query: 262 ggatattattacattttttatttcagattactgttgctatacacacagagctaaggcaat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggatattattacattttttatttcagattactgttgctatacacacagagctaaggcaat 521

                                                                       
Query: 322 acaattaagaaaaaattcaaggtggcatttgaagatgttgatataatctgattataagta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acaattaagaaaaaattcaaggtggcatttgaagatgttgatataatctgattataagta 581

                                                                       
Query: 382 aaaagagaaaacattgttgggcagtggtggcgcaagcctttaatcccagcacttgggagg 441
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 582 aaaagagaaaacattgttgggcagtggtggcgcaagcctttaatcccagcacttgggaag 641

                                                                       
Query: 442 cagaggcaggcggatctctgagttcaaggccagcctggtctacagagtgagttctaggac 501
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 642 cagaggcaggcggatctctgagttcaaggatagcctggtctacagagtgagttctaggac 701

                                                                       
Query: 502 agccagggctacagaggggaatttgaacaaaaatattaaacataacaatgttgcataaac 561
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 702 agccagggctacagaggggaatttgaacaaaaatattaaacataacaatattgcataaac 761

                                            
Query: 562 agtattaagatcataaaacttatttttttgcaa 594
           |||||||||||||||||||||||||||||||||
Sbjct: 762 agtattaagatcataaaacttatttttttgcaa 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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