BAC Information

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BAC

Clone NameMSMg01-393A21
Chromosome16 (Build37)
Map Location 67,299,739 - 67,300,178
singlet/doubletsinglet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393A21.T7 (MSMg01no393_a21.b1)MSMg01-393A21.TJ (MSMg01no393_a21.g1)
ACCAG494444AG494445
length7521,113
length of high quality
(start - end)		443 (39 - 481)---
definitionCHROMAT_FILE: MSMg01no393_a21.b1 PHD_FILE: MSMg01no393_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:49 2005CHROMAT_FILE: MSMg01no393_a21.g1 PHD_FILE: MSMg01no393_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
CAAGAAGATGGTCACAGGGCACATGAGATGGGAAGAAACAGTGACTCATA
TGCAGCTAAGAAACACATGGAAGCACCAGGGGACAGGTGAAACAGGTGGC
TATACCATGAGAATCTGAGGAACCTTGGCCTTGTCAGTACCTGATTTTAG
CTCAGAGTCTGAACCACCAGCCCAAGGACATATACGGGCTAGAAATAGGC
CTCCCTGCACATATGTAGCAGATGTGCAGCTTAGTCTTCATATGGGTCCA
AACAACTGGAATGGGGGCTATTCAAAGAGTTGTTGCCTGTACATGGGGTA
TGTTCTACTAGCTGGGATGCCTTGTCTGGCCTCAATGGCAGATGAAGCAC
TTAGCCTAGCAGAGACTTGAAGGGCCAGGATGGATGGATTCACAAGGGGG
CCCTACCCACTCAGAGGAGAAGGGGAAGGGGGTGGNNGAAGGATTGTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGTTTTTTTGTTTGGGN
TTTGTTTTTTTTTTTNTTTTTTTTTTTTTGCTGGTGTTTTTGTTTTCGNC
TTTCCCTNCTTCTTCNTCCTNTTTCCTTGCGTCCTCTTCTTCCTTTTTTC
TT

TCTTGTCCGCGAGTGCGGCCGTATATGTGCGCCTGATCAAATGTAGTATG
AAGGATATGATTGAGAGCAGGCTAGTTTGCGAGCGTCTCACGAGTAGCTG
CGGAATACATTGAAGGGATGTAACTAGACAACTACTATGGATGGACTGTG
CTCTTGATTACGACATTATGTTGATGAGCTTGGCATGTTGGATTATGAGT
TGAGTGTAGATGAGCAGAGCGTACGCGAAGAGAAGCGAGGGAGTAGGACG
ACGATGCGCTTCGGTAGTAGTAGATCAGTGCTACTTTAATCCGTTCTTCT
TCTCTGTTCCGTCGCGTATGTTGTATCGCTGTGTGCGCGCTTTTGTTGGA
TGGATAGTTAGCCAGACATTNCGTATAATGCATCATCGTACATCGTCATT
TGTTCTGATATGTAGGCTCACATATGATATCTGTGCTCGTTTCTTCTATG
TGTTCGCGTACGGTGCGATGTGTTTTACATTGTCGTCACGCTGTCTGTGT
ATATCGTCACGACTATTACTATGTTTATAGTCGTGATCTTAACGATTGAG
AGTGGTATGTGATAAATTTACGACTCGTGATAGAGACGAAAGATTATAGG
CTAGATGGTATGGTTGGAAGTGCGTGGTAGAAGCGGGAGGTGTTTAGTGT
GATATCTATACTCTCATCCGAGTCTTGTAGTAGCTAGATGACGCCTGGTG
TTATCATTGACCTCTCTCTGCATACTCAATCTATGTATATTGTGAGTGCG
TGGCTGAGTGATCTATGTATTTAGTAATCGTACGCGATGATGTCGGGTGA
GTTAATCGAACCGCGATCTATATGAGACTCGAGAGCGGTTAGGGTGGAGG
AGTAGCGGGAGGGAGCGTGACGATGCGATTAGGTAATAGAAATGGTTATA
AATGAGACAAGGGTGGCGTGAACATGCGGCGTATCCTACGCGCGTATGTT
TGAGTCGTGGCTCGGAGCTCAGCGCTATCGCGTATGCTGTACTCTGCGAG
AACATAGCGTCATATAAGCGCGAGCTGAGAGGATACAATGTATCGAGGCG
AGGGTGCAGTGGAGCGTGAGCGTGGCGACGTATCGATAGGTGATAAGGCA
GATCGTCGGACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_a21.b1 MSMg01no393_a21.b1 CHROMAT_FILE:
MSMg01no393_a21.b1 PHD_FILE: MSMg01no393_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:49 2005
         (443 letters)



>mm_chr16_67299535_67300377
          Length = 843

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaagaagatggtcacagggcacatgagatgggaagaaacagtgactcatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaagaagatggtcacagggcacatgagatgggaagaaacagtgactcatatg 264

                                                                       
Query: 65  cagctaagaaacacatggaagcaccaggggacaggtgaaacaggtggctataccatgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagctaagaaacacatggaagcaccaggggacaggtgaaacaggtggctataccatgaga 324

                                                                       
Query: 125 atctgaggaaccttggccttgtcagtacctgattttagctcagagtctgaaccaccagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctgaggaaccttggccttgtcagtacctgattttagctcagagtctgaaccaccagcc 384

                                                                       
Query: 185 caaggacatatacgggctagaaataggcctccctgcacatatgtagcagatgtgcagctt 244
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 caaggacatatatgggctagaaataggcctccctgcacataggtagcagatgtgcagctt 444

                                                                       
Query: 245 agtcttcatatgggtccaaa-caactggaatgggggctattcaaagagttgttgcctgta 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtcttcatatgggtccaaaacaactggaatgggggctattcaaagagttgttgcctgta 504

                                                                       
Query: 304 catggggtatgttctactagctgggatgccttgtctggcctcaatggcagatgaagcact 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacggggtatgttctactagctgggatgccttgtctggcctcaatggcagatgaagcact 564

                                                                       
Query: 364 tagcctagcagagacttgaagggccaggatggatggattcacaagggggccctacccact 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tagcctagcagagacttgaagggccaggatggatggattcacaagggggcactacccact 624

                               
Query: 424 cagaggagaaggggaagggg 443
           ||||||||||||||||||||
Sbjct: 625 cagaggagaaggggaagggg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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