BAC Information

Click to search

BAC

Clone NameMSMg01-394K05
Chromosome16 (Build37)
Map Location 56,426,203 - 56,574,042
singlet/doubletdoublet
Overlap geneAbi3bp
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneTfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K05.T7 (MSMg01no394_k05.b1)MSMg01-394K05.TJ (MSMg01no394_k05.g1)
ACCAG495647AG495648
length783867
length of high quality
(start - end)		473 (54 - 526)192 (85 - 276)
definitionCHROMAT_FILE: MSMg01no394_k05.b1 PHD_FILE: MSMg01no394_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:05 2005CHROMAT_FILE: MSMg01no394_k05.g1 PHD_FILE: MSMg01no394_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,573,574 - 56,574,042)(56,426,203 - 56,426,343)
sequence
NCCCCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACTATTCTTATTAGCTACTTAGGAACATGAAAGAG
AAAAATGCTAGCTATCCATCCCTTTCCAGCTGCATAGAGAACAGAAACAA
AGTATTATAAATAGTGTGGTCTTTTCCTTATTTGAAGAATTCAAGCCTTC
TTATTCCATGGAGGGCGTATTAAAAGTAATATTTTTCCAATTTGGTAAAA
GACAAACCTGAGAATTTATGGTATATACAGGGCTACCTTTTAAGAGTAAA
ACACAATTATTTTTAATTTAGCAAGCAAAATTGATAGTTAAGCTAAACAT
ACAGTAAGACTGCAAAGCATACATTTATCGTCGTATTTACATACTGCTTC
AGGCCACTCAGTGCTCCAGTTTAGATGCCATAGTAAGACAATCTCCAGCA
GTAGGCTTTGTAGGGTTAACTGTCTCATGTAACGATCTCAAGGATACCTT
GAATGGTAGACATTATTAATCTAGTTTTATGAATGTAAACCATCGCGGGG
CTTTCCTAGAATTGCCAGCTGGTGACCTTTTACCTTGGATGGTAGTAGAG
CCTCCAACCCAAGAAAGTTGCACTGGGGTATGGTTTTTTACCCCCTACCA
GTAAACCCGGCACCCAGGTTGGGGAAAGCCTAGTTTCCCTCCTATTCTCT
TTCAACCTGACGGGTATACAACCTGTTTTCTTCTTTAGAATACAACCCGG
GTCCACGGAAGGTAATCTTGCTTCTCCCCTTTN

CCCCNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCAAGGATTGGTT
TGTTTATCTAGTTCTCCACTCTAAATTTCTGATTCTCAGAATCCTCAGAG
ATAATCAACTTATATTGCTGTTAGTCACTGAATTTGTGGTTATCTGTTAT
GGTAACAAAAGGAAACCAATGCAATGCTTCAACTAGAGATAGGGAGAGGG
GAGAAAGAGGGATGGAGAGAGATTTTNTNTTTNTTTTTTTTTTNTNTTNN
NNNNNNTNNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTT
TTTTNNTNNTTNNTTTTTTTTTTTTTCCTCCCTTTCCCTTTTTCCTTCCT
TTTCCCCTCCTCTTCTCTTCCCCTTTCCCCTTCCCCCCCTCTCCTTTTTC
CTTTCTTTTTTTTTCTTCCCCCTTCTCTTCTCTTCTCCTTTCCTCCCCTC
TCTCCCTTTCCCTTCCTTTCTTTCTTCCTTCTTTTTCCCCCTTCTTCCTC
TCCTCCTTCCCCTCCTTTCTCCCTCCTCTCCTTTTCCTTCTCCCCCCCTT
TTTTCCTCCCCCTTNTTTTTCCCCTCCTCTTTTTCCTNTCCTCCTCCTCT
TTCCCTCTCCCTCCTCTTTCTCCCTTTCCCCTTCCTTCTTTTCCCCCCTT
TTTCTCCCCCTTCTCTCCTCCCTTTTTCTCCCCCTCTCTTTCCCTCTCTC
TCCCCTCTTCCTCTCTCTTCTCTCTTCNCTCCCCTTCCCTTTTCCTTTTT
TTCTTTCTCNTCCCTTTTTTCTTTTCCCTCTCNTTTTCCTTTCCTCCCCT
TTCCATTTCTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k05.b1 MSMg01no394_k05.b1 CHROMAT_FILE:
MSMg01no394_k05.b1 PHD_FILE: MSMg01no394_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:05 2005
         (473 letters)



>mm_chr16_56573370_56574242
          Length = 873

 Score =  861 bits (445), Expect = 0.0
 Identities = 463/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactattcttattagctacttaggaacatgaaagagaaaaatgctagctatcc 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattctcactacacttattagctacttaggaacatgaaagagaaaaatgctagctatcc 614

                                                                       
Query: 65  atccctttccagctgcatagagaacagaaacaaagtattataaatagtgtggtcttttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atccctttccagctgcatagagaacagaaacaaagtattataaatagtgtggtcttttcc 554

                                                                       
Query: 125 ttatttgaagaattcaagccttcttattccatggagggcgtattaaaagtaatatttttc 184
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 553 ttacttgaagaattcaagccttcttattccatggagggagtattaaaagtaatatttttc 494

                                                                       
Query: 185 caatttggtaaaagacaaacctgagaatttatggtatatacagggctaccttttaagagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caatttggtaaaagacaaacctgagaatttatggtatatacagggctaccttttaagagt 434

                                                                       
Query: 245 aaaacacaattatttttaatttagcaagcaaaattgatagttaagctaaacatacagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaaacacaattatttttaatttagcaagcaaaattgatagttaagctaaacatacagtaa 374

                                                                       
Query: 305 gactgcaaagcatacatttatcgtcgtatttacatactgcttcaggccactcagtgctcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gactgcaaagcatacatttatcgtcgtatttacatactgcttcaggccactcagtgctcc 314

                                                                       
Query: 365 agtttagatgccatagtaagacaatctccagcagtaggctttgtagggttaactgtctca 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 agtttagatgccatagtaagacaatctccagcagtaggctttgcagggttaactgtctca 254

                                                            
Query: 425 tgtaacgatctcaaggataccttgaatggtagacattattaatctagtt 473
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 253 tgtaacgatctcaaggataccttgaatggtagaaattattaatctagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_k05.g1 MSMg01no394_k05.g1 CHROMAT_FILE:
MSMg01no394_k05.g1 PHD_FILE: MSMg01no394_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:05 2005
         (192 letters)



>mm_chr16_56425953_56426544
          Length = 592

 Score =  265 bits (137), Expect = 1e-75
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                       
Query: 51  ctcagaatcctcagagataatcaacttatattgctgttagtcactgaatttgtggttatc 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctcagaatcctcagagataatcaacttatattgctgttagtcactgaatttgtggttatc 310

                                                                       
Query: 111 tgttatggtaacaaaaggaaaccaatgcaatgcttcaactagagatagggagaggggaga 170
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 311 tgttatggtaacaaaaggaaaccaatacaatgcttcaactagagatagggagaggggaga 370

                                
Query: 171 aagagggatggagagagattt 191
           |||||||||||||||||||||
Sbjct: 371 aagagggatggagagagattt 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |