Query= MSMg01no394_m01.b1 MSMg01no394_m01.b1 CHROMAT_FILE:
MSMg01no394_m01.b1 PHD_FILE: MSMg01no394_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:15 2005
(520 letters)
>mm_chr16_67984048_67984967
Length = 920
Score = 920 bits (476), Expect = 0.0
Identities = 506/520 (97%), Gaps = 8/520 (1%)
Strand = Plus / Plus
Query: 5 gaattcacaacgtatcaggaaaaatgaaagcaactctgaatgtgggcacattttcactta 64
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattaacaacgtattaggaaaaatgaaagcaactctgaatgtgggcacattttcactta 264
Query: 65 gagaataatgatgttttattgttaaagaaatgtgaaattatattatagatttaatttctt 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaataatgatgctttattgttaaagaaatgtgaaattatattatagatttaatttctt 324
Query: 125 atcattatgattatcttgcatttctgtattactaagaatgctacagataggattttcatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcattatgattatcttgcatttctgtattactaagaatgctacagataggattttcatg 384
Query: 185 gttaaaacacgctacttataaaatggattaggtttcctttctcaagaattggatatatta 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttaaatcacgctacttataaaatggattaggtttcctttctcaagaattggatatatta 444
Query: 245 atattgaaggaaaaaatgaaatatatttcattccccttaatatattttctttcaacacat 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atattaaaggaaaaaatgaaatatatttcattccccttaatatattttctttcaacacat 504
Query: 305 gtcatatattgaatttcatgttgatcatatcttcagaatgtttatactcactgattgagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcatatattgaatttcatgttgatcatatcttcagaatgtttatactcactgattgagt 564
Query: 365 ctgttctttttcaaagatagcaatttatttatttatttatttatttatttatttatgtat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ctgttctttttcaaagatagcaatttatttatttatttatttatttatttatttatttat 624
Query: 425 ----aatttcaactcacaaaaattttcctcaaaatagatctta----ttgttatgtattc 476
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 ttataatttcaactcacaaaaattttcctcaaaatagatcttacttattgttatgtattc 684
Query: 477 taactatgtggtatactcagaacataattttaaatcttgg 516
||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taactatgtggtatactcagaacataattttaaatcttgg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_m01.g1 MSMg01no394_m01.g1 CHROMAT_FILE:
MSMg01no394_m01.g1 PHD_FILE: MSMg01no394_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:15 2005
(643 letters)
>mm_chr16_68157330_68158374
Length = 1045
Score = 1156 bits (598), Expect = 0.0
Identities = 633/645 (98%), Gaps = 2/645 (0%)
Strand = Plus / Minus
Query: 1 cacgtataaagatgtccctattctcaacagagaaataaactgcaaaatcatatttcaaca 60
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 845 cacgtataaagatgcccctattctcaatagagaaataaactgcaaaatcatatttcaaca 786
Query: 61 tgtactccagctataatcactaaaatcattgactagaaatgtgtttcataccttcagggt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tatactccagctataatcactaaaatcattgactagaaatgtgtttcataccttcagggt 726
Query: 121 gatttcctcttaacaaattacatatttctcctaaatgatggtaaaattattattttccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gatttcctcttaacaaattacatatttctcctaaatgatggtaaaattattattttccct 666
Query: 181 caacaggacacatagtgatatatgaca-tttattacaatatgacttctattattctcctg 239
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 665 caacaggacacatggtgatatatgacactttattacaatatgacttctattattctcctg 606
Query: 240 gaaaacatttttcacctcaaaacctttttctaagtctcctgtcttcccgcttgtacttta 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 605 gaaaacatttttcacctcaaaacctttttctaagtctcctgtcttcctgcttgtacttta 546
Query: 300 aaactttttggtgtgaagattttctataattactaagtcaggttatcttccaatagtcaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caactttttggtgtgaagattttctataattactaagtcaggttatcttccaatagtcaa 486
Query: 360 tagagattttattccacacaaaacctgaccttcaagtgacatgacatacattttattagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tagagattttattccacacaaaacctgaccttcaagtgacatgacatacattttattagc 426
Query: 420 cataattgctcttgcctctcaagataaaattaagaggtttaataaatctttaatgactat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 cataattgctcttgcctctcaagataaaattaagaggtttaataaatctttaatggctat 366
Query: 480 ataaaatacagacaactagattgcattttttcctttgaccctctgtttagncctttcacc 539
|||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 365 ataaaatacaaacaactagattgcatttttttctttgaccctctgtttagtcctttcacc 306
Query: 540 agataattagcttgatttatatttaattttatagtttatctaatttagaaatgcttttta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agataattagcttgatttatatttaattttatagtttatctaatttagaaatgcttttta 246
Query: 600 ag-aaaagtaaaccaacagatatataaatgatttttcttttaata 643
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaaaaagtaaaccaacagatatataaatgatttttcttttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
