BAC Information

Click to search

BAC

Clone NameMSMg01-394N01
Chromosome16 (Build37)
Map Location 79,055,993 - 79,056,504
singlet/doubletsinglet
Overlap genePrss7
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394N01.T7 (MSMg01no394_n01.b1)MSMg01-394N01.TJ (MSMg01no394_n01.g1)
ACCAG495782AG495783
length757728
length of high quality
(start - end)
153 (57 - 209)522 (84 - 605)
definitionCHROMAT_FILE: MSMg01no394_n01.b1 PHD_FILE: MSMg01no394_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:20 2005CHROMAT_FILE: MSMg01no394_n01.g1 PHD_FILE: MSMg01no394_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGTTTACCTCTGAGCCCCATTTTTAATGGGGT
TATTTGATTTTCTGGAGTCCACCTTTTTGAGTTCTTTATATATATTGGAT
ATTAGTCCCCTATATGATTTAGGTTAGGTAAATATCCTTTCCCAATCTGT
TGGTGGATTTTTTGTCTTAGTGACGGTGTCTTTTGCCTTGCAAAAGCTTT
GCAGGTTCATTAGGTCCCATTTGTCAATTCTCGAGCTTATAGCAAAAGCC
ATTGCTGTTTTATTCAGGAATTTTTTCCCCTGTGCCCATATCTTTGAGGC
TTTCCCCCACTTTCTCCTCTATAAGTTTCAGTATCTCTGGTTTTATGTGG
AGTTCCTTGATCCACTTAGATTTGACCTTACTACAAGGAGATAGGAATGC
GTCGATTTGCATTCTTCTACTTGATAACCACCAGTTGTGCCAATACCATT
TGTTGTATACGCTGTCTTTTTTCTCCTGGACGCCTTTAGTTCCTTTGTCA
TAGACCAAGTGACCATACGTGTTTGTCTCTCATCTCTGGATCTTCAATTC
CCGTTTTCTGTCTTTACCTGCCTCGCCCTCCCTCTCAGTGCTCATGTATA
TTTTCTTTTTCGATCCGTCTCCTCCCTTTTCTTCCCTTCTCGTCTCATTC
CTGTTTCCTTTTTCCTTCCGCCGCTTCTTTCTTTCTCCCCTTTTTTCCCA
TTCCCCG
NNNNTTTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTCTTGTCTTCA
GACACCAAGGGTTTAACTAAAAGATCAGATTTTTCTTTTTTCTTTTCTTT
CTTTCTTCCTTCCTTTCTTTCTTCCTTTCTTTCCTTTCTTTTTCTTTTTC
TTTTTTTTTTCATCTTTTAAATATTTTTACAATATTTGTCTTCTTCATTA
TTGGCTCTAGCTTCCCCATTGGTCTTACTGTAGCTAGGTAAACTCAACAT
TTTTCTGAACTGCCCTAGCAGCCCCTAAATTAACTATGCAGCCACAACCA
TCAGCCTTGCCTCTCTCCTCCTCTTAGTCTGGGCTGGGCTCCTGTATGCC
AACTCCATATTTGCCTATATCATATTCCTGCAGTGAGCAAGCAACTCTGA
GCAAATATCCATATCCAAATACTGAGCCATATCGACATGCTGAGAGCTAT
ATCCACATACTGAGCCATATCCATATACTGAGCCATATACACATACTTTT
GCAGCCTTCTAAATTTATTACTGCAACATAATAACCCCATTAAACTGAAT
ATTTGCAATCCACCCATCTGCTTTTTGCTATGAACTATTACTGAAAGTTA
TCCTGACAGTGTTCAATTTGTGACCATGGAAGAATGTATACAATATTANA
GAATACTAGAATGGTTCAACAAATTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_n01.g1 MSMg01no394_n01.g1 CHROMAT_FILE:
MSMg01no394_n01.g1 PHD_FILE: MSMg01no394_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:20 2005
         (522 letters)



>mm_chr16_79055666_79056587
          Length = 922

 Score =  924 bits (478), Expect = 0.0
 Identities = 507/522 (97%), Gaps = 10/522 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtcttgtcttcagacaccaagggtttaactaaaagatcagatttttcttttttct 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 actatgtcttgtcttcagataccaagggtttaactaaaagatcagatttttcttttttct 780

                                                                       
Query: 61  tttctttctttcttccttcctttctttcttcctttctttcctttctttttctttttcttt 120
           ||||||||||||||||||||||||||||         |||||||||||||| ||||||||
Sbjct: 779 tttctttctttcttccttcctttctttc---------ttcctttctttttc-ttttcttt 730

                                                                       
Query: 121 tttttttcatcttttaaatatttttacaatatttgtcttcttcattattggctctagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttttttcatcttttaaatatttttacaatatttgtcttcttcattattggctctagctt 670

                                                                       
Query: 181 ccccattggtcttactgtagctaggtaaactcaacatttttctgaactgccctagcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccccattggtcttactgtagctaggtaaactcaacatttttctgaactgccctagcagcc 610

                                                                       
Query: 241 cctaaattaactatgcagccacaaccatcagccttgcctctctcctcctcttagtctggg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctaaattaactacgcagccacaaccatcagccttgcctctctcctcctcttagtctggg 550

                                                                       
Query: 301 ctgggctcctgtatgccaactccatatttgcctatatcatattcctgcagtgagcaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgggctcctgtatgccaactccatatttgcctatatcatattcctgcagtgagcaagca 490

                                                                       
Query: 361 actctgagcaaatatccatatccaaatactgagccatatcgacatgctgagagctatatc 420
           | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 489 agtctgagcaaatatccatatccgaatactgagccatatcgacatgctgagagccatatc 430

                                                                       
Query: 421 cacatactgagccatatccatatactgagccatatacacatacttttgcagccttctaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacatactgagccatatccatatactgagccatatacacatacttttgcagccttctaaa 370

                                                     
Query: 481 tttattactgcaacataataaccccattaaactgaatatttg 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttattactgcaacataataaccccattaaactgaatatttg 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)