BAC Information

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BAC

Clone NameMSMg01-396J09
Chromosome16 (Build37)
Map Location 35,928,130 - 35,928,465
singlet/doubletsinglet
Overlap geneDtx3l
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217
Downstream geneParp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J09.T7 (MSMg01no396_j09.b1)MSMg01-396J09.TJ (MSMg01no396_j09.g1)
ACCAG497128AG497129
length776790
length of high quality
(start - end)
165 (69 - 233)337 (68 - 404)
definitionCHROMAT_FILE: MSMg01no396_j09.b1 PHD_FILE: MSMg01no396_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:45 2005CHROMAT_FILE: MSMg01no396_j09.g1 PHD_FILE: MSMg01no396_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGTAAAAGATNACTATATTCTTATCTCGGCGGNNAATAATCCTTT
TCAGACACAAGCAGNACNGAGGACACNAAGAGGAAAGAANNATACATGCA
CAATTTTCCCGAATACTAAAATATTATCTTAAACCATAACTGTTTTGAAT
ATACAAAGAACGAGGTTATATATCCAATCTATCTTATATGTATGACATAT
AAGATATGTCTGAGATATAAATCCAGCATGGTATTGCTTTTTTATGTCCA
GGCAATCCAGAACAATTTAACAATTTAACAATTATTTCTTAAAAGGACAG
CATTTTTCCTTATGTGCCGCACACGCATAAGCAATTGCAAATTTGATAAT
TCCCACAATCTGAGGGATGAACCATCTTAAGCAATTGTGAGTTCTGACCC
CCCCCCCCCCCCACCAATATACAAATTAAGGTTTGATTGTTCAGTATTCT
AAAACATCATCTACAGCATACAACTTAACTATCTGTGCTGAAATTAGGCC
AAACTTCAAGAATAATTATGTGACCCAATTCCCATTTATTTATTTCCCTT
ATAGGTGTTTGCTCCCCCACTCCTTATTTGTCCCGTTTACTTGCTTGTAC
TTTTTTTATAACTCCTTACCTTGGCCTCCTTTTCCTTTTCGACTTTCTTT
TTTATTTTCCTTTAAATCCCGCCCTCCCAATAGTTCGCTCATATTTCATT
TCCTCTTCTACACGATCCTTATCGTTTTTTTTGTACCTCTCACATATATC
TTCTATTTTTGCCCCCTTATTTACCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAACTCAGAA
ATCCGCCTGCCTCTGCCTCCCAAGTGATGGGATTAAAGGCGTGCGCCACC
ACGTCCGGCTGCCAAACCTGTTTTTAAAGTTCCCATTTATACAAGGGTTT
CACTTTCCCACTTATACAAGGGTTCAGGAAGAGATTAAAAAATAAACAAC
TAATGTATTGCTACAGAGATGGACATGAAAAAGAATTATGGGATGGAACT
CACTGACCTAAGGTTTATTTTCCAACATCAAAACCAAATCAAACCGAACT
AAACCAAACCAAATCAACCCAAACCAAAAAAGCTAAAACCAAAAAACCCC
AAACAAACCCACCCACCAACAAAAAAAACAGGCAATGCCAGCACTCAGGA
GGCTGATACAGGCAGATCTAAGTTCAAGACCAAGCTGGTCCACAAATTAG
TTCCAGAGTTATGCAGNGAGACCCCGTCTCAAATATACAAAGCTTACCAA
AATCTCGGGAACGTTCCATTATGTTAGGTCCTTTTAACATTTTTTATTAA
TTCTCCCCTTCCCCCTACCTGTACCTCTTTAATGGCTTCCGTTCTCCCTT
TTTCCAATTTCTTCACCTTATTTTACCTATAAAAGTTTTCTTTCTTTAAC
TTTCTCCCCCCCTCTTTGGTTGGCGGGTTTTAATATCGCCTCCTTTCTTT
TCTCCCTATTCTCTTTTCTTAATCTTCAACTCTGTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j09.g1 MSMg01no396_j09.g1 CHROMAT_FILE:
MSMg01no396_j09.g1 PHD_FILE: MSMg01no396_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:45 2005
         (337 letters)



>mm_chr16_35927930_35928666
          Length = 737

 Score =  551 bits (285), Expect = e-161
 Identities = 324/337 (96%), Gaps = 1/337 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccaagtga 60
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| 
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggcgtgcgccaccacgtccggctgccaaacctgtttttaaagttcccatt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggggtgcgccaccacgtccggctgccaaacctgtttttaaagttcccatt 320

                                                                       
Query: 121 tatacaagggtttcactttcccacttatacaagggttcaggaagagattaaaaaataaac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tatacaagggtttcactttcccacttacacaagggttcaggaagagattaaaaaataaac 380

                                                                       
Query: 181 aactaatgtattgctacagagatggacatgaaaaagaattatgggatggaactcactgac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aactaatgtattgctacagagatggacatgaaaaagaattatgggatggaactcactggc 440

                                                                       
Query: 241 ctaaggtttattttccaacatcaaaaccaaatcaaaccgaactaaaccaaaccaaatcaa 300
           ||| ||||||  |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 441 ctagggtttaaattccaacatcaaaatcaaatcaagccgaactaaaccaaaccaaatcaa 500

                                                
Query: 301 cccaaaccaaaaaagctaaaaccaaaaaaccccaaac 337
           |||||||||||||||||||||||||||  ||||||||
Sbjct: 501 cccaaaccaaaaaagctaaaaccaaaac-ccccaaac 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)