Query= MSMg01no397_a15.b1 MSMg01no397_a15.b1 CHROMAT_FILE:
MSMg01no397_a15.b1 PHD_FILE: MSMg01no397_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:20 2005
(350 letters)
>mm_chr16_38106186_38106935
Length = 750
Score = 669 bits (346), Expect = 0.0
Identities = 349/350 (99%)
Strand = Plus / Minus
Query: 1 gaaaagacttctcagcattctgcaaaactgagactaaaactgaatggggggaaatgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaaaagacttctcagcattctgcaaaactgagactaaaactgaatggggggaaatgaaac 491
Query: 61 attctgcttaattcttaattaataacctttgtgattcttaatgagccaaaatagttaccc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 490 attctgcttaattcttaattaatagcctttgtgattcttaatgagccaaaatagttaccc 431
Query: 121 atatttttgaagggtatcttagagcaactgctcctacaaatatattggacatctcagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atatttttgaagggtatcttagagcaactgctcctacaaatatattggacatctcagtgt 371
Query: 181 tggggaaagatgttatactccagactaacctgatgtttctatcatatttggtcatcttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggggaaagatgttatactccagactaacctgatgtttctatcatatttggtcatcttaa 311
Query: 241 tcaaacagttaatacacaccacggtagtcaatacacaccacactgccactatataaacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcaaacagttaatacacaccacggtagtcaatacacaccacactgccactatataaacac 251
Query: 301 caaacaatgcagtctaaaagaatgtctatacaaatatttgatccacacaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caaacaatgcagtctaaaagaatgtctatacaaatatttgatccacacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_a15.g1 MSMg01no397_a15.g1 CHROMAT_FILE:
MSMg01no397_a15.g1 PHD_FILE: MSMg01no397_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:20 2005
(544 letters)
>mm_chr16_37891916_37892854
Length = 939
Score = 913 bits (472), Expect = 0.0
Identities = 529/564 (93%), Gaps = 26/564 (4%)
Strand = Plus / Plus
Query: 2 gggactcggttgcttgctgtttgctaagtagtaacacacaaagaagaaacagcaacaaca 61
|||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 181 gggacttggttgcttgctgtttgctaagtagtaacgcacgaagaagaaacagcaacaaca 240
Query: 62 ggaaattagatatcctgacagcaaagaccaaacttgctccaaggaactcatagcccctaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaaattagatatcctgacagcaaagaccaaacttgctccaaggaactcatagcccctaa 300
Query: 122 tcagcaggaagtactctgaggataatgtcgccccttccccctctatccttttggtttttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 tcagcaggaagtactctgaggataatgtcgccccttccccctctatccttttgttttttt 360
Query: 182 ctctcctatctagcattaaggggttaaaagggtggaataaagaagaactcactaagtagc 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 ctctcctatctagcattaaggggttaaaagggtggaataaagaagaactcactaggtagc 420
Query: 242 cagatccagctacagatctgccttgcctttgcctctggagtgctggaattaaagatgtgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagatccagctacagatctgccttgcctttgcctctggagtgctggaattaaagatgtgt 480
Query: 302 gcctcaatgcccagctataggctatcttcttaacggtcttattttaaaaggtattctgta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcctcaatgcccagctataggctatcttcttaacggtcttattttaaaaggtattctgta 540
Query: 362 aatattgggaaggtgtaaatggaaaaggaaagttgtacatgatgtcatgagaactctaaa 421
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatattgggaaggtttaaatggaaaaggaaagttgtacatgatgtcatgagaactctaaa 600
Query: 422 aatgttcttaaaatgtcattattta---------------------aagaccgaatttaa 460
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 601 aatgttcttaaaatgtcattatttatatgtattttcccttcatataaagaccgaatttaa 660
Query: 461 aaccatcggtttgatagttgggtttttttttttaattaaagctggagtaagtaaaggtct 520
||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 661 aaccatcagtttgatagtt-----tttttttttaattaaagctgaagtaaataaaggtct 715
Query: 521 gtaaaaatgagtctgaactcctta 544
||||||||||||||||||||||||
Sbjct: 716 gtaaaaatgagtctgaactcctta 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 939
Length adjustment: 10
Effective length of query: 534
Effective length of database: 929
Effective search space: 496086
Effective search space used: 496086
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
