BAC Information

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BAC

Clone NameMSMg01-397A20
Chromosome16 (Build37)
Map Location 94,083,421 - 94,083,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
Downstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A20.T7 (MSMg01no397_a20.b1)MSMg01-397A20.TJ (MSMg01no397_a20.g1)
ACCAG497482AG497483
length790968
length of high quality
(start - end)
397 (40 - 436)204 (71 - 274)
definitionCHROMAT_FILE: MSMg01no397_a20.b1 PHD_FILE: MSMg01no397_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:21 2005CHROMAT_FILE: MSMg01no397_a20.g1 PHD_FILE: MSMg01no397_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AATACTTCTCCATATCATGGTTGACTCTTTCAAAGTCTATTCTTATAGAA
TAGGAATGCATTTTTTTTTTCTGAGACAGGGTTTCTCTGTACTACCTAGG
CTGTTCTGGACCTCACTCTGTAGACCAGGCTAACCTCGAACTCAGACTCT
GCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACAACTGCCCGGCAGGA
ATGCATTTTTTTAAAGAAATATTTATTCATTTACTTTATGTATATGAGTA
CACTGTAGCTGTCTTCTTATTCACCAGAAGAGGGCATCAGATCCCATTAC
AGATGGTTGTGAGCCACCATGTGATCAGCGGGAATTGAACTCGGGACCTC
TGGAAGAGCAGTCATCTCTCTAGCTCAGGAATGCATTCTTACAAAATGTT
GTGTGTGCATGTTTGCATGTGTGCACCTACCCGAAGGTACCTTTGTAGGT
CAGGAATGAATGTTGGTTTCCCTAGAGCTGCCTTTCCCGTACTGGGAACT
GCCCTTTGCCCCCCCGGGTTAATCATCAATATCCTTTTATTATAAACCTT
CCCTCCCCCTCTTATGGGGTTTTGGTTGGCACTTCTCTCTATTTATTCCC
CGTTTTTCCTCTCTTCCTTTATTTCCCCTTATCCCCCCCTTTTTTTCCCC
CCCGGTTTTTTTTCCGTTGTGTGTCTCTCTCATCTTCCTTTTTTGGCGCC
TTATATCTTCCACGCTTTTCCCTTTTCTCCATGCTTTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCCCCGGCTTGAAAGGGATTACCCAGATC
ATAGAAACATGGCTAAGTGGAGGTGAGAGAAACCCGGCAAGCAACAAGAA
TTGAAACTTCTCAACGAATTTCCCAGTTTGTAACAGGAAAGCGCATCTGA
ATTCTTGCGACTGGATTTTCGGAGTGGAGGCCGTTTTGACTTTAGGGAGG
AGATGGCAAACGCTATTGAAGTGGGTATGGGGTAGCTCCAGGCCCATCAC
ACTGGCTCCACATAACCCTTTTTTTCACTATCATACATTGGTTAATTAGT
TATTCTCTCCAGAACCACGCTCCTTCAGTGTCTGTCGTTTTATCGTCCAA
CGACATTTGGTACGGTTCACCCCCCCCACCCACATTAATTCCCCAGGCTG
TTTTTTCTCTCCTCTCTTCCTTTACTTGTCTACACTTCTTCCCTACCTTT
CTTCTCTCTACTCCTCCCTCTGCCTCGTCTCTTTTTTTGCTTTCATACCC
CCCCCCCCTTCTCATTTTCCCGTCCTCTTAATATCTACCTCCCGCCCTCT
TCTCTCTCTTACCCTATTACTCGATCCATGTTTGTTTCTACTTCTCCTTG
TCCCACCCTCTATTATCATCCTCCTCCTCCACTTCTGCACATATCTCCAT
CACATTTCCCTCCCCCAACCCTTCCTCACTCTCCCCTCAATACTTGTTCA
TTTCAGCTTCACTATCACATTCCCCCCTATTCTATACCCCATTTTATTCC
TCCTTTCTTCTAGCCGTTTCCCATCCCACGCCTATCCTCCCCCCCATCTT
CCCTATTATTTCCCTCTCCTTGTATATCTTCCTTGGCGTTTTTCTTACAG
CCTCATCTCTTATTTTATGCTTCTTTCTATATCTATCCTACTTGCTTCTT
AACCTATCTGTATTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a20.g1 MSMg01no397_a20.g1 CHROMAT_FILE:
MSMg01no397_a20.g1 PHD_FILE: MSMg01no397_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:21 2005
         (204 letters)



>mm_chr16_94083221_94083824
          Length = 604

 Score =  379 bits (196), Expect = e-110
 Identities = 202/204 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccggcttgaaagggattacccagatcatagaaacatggctaagtggaggtgagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctccccggcttgaaagggattacccagatcatagaaacatggctaagtggaggtgagaga 345

                                                                       
Query: 61  aacccggcaagcaacaagaattgaaacttctcaacgaatttcccagtttgtaacaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aacccggcaagcaacaagaattgaaacttctcaacgaatttcccagtttgtaacaggaaa 285

                                                                       
Query: 121 gcgcatctgaattcttgcgactggattttcggagtggaggccgttttgactttagggagg 180
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 284 gcgcatctgaactcttgcgactggattttcgcagtggaggccgttttgactttagggagg 225

                                   
Query: 181 agatggcaaacgctattgaagtgg 204
           ||||||||||||||||||||||||
Sbjct: 224 agatggcaaacgctattgaagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)