MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-397G06
Chromosome	16 (Build37)
Map Location	85,536,415 - 85,728,448
singlet/doublet	doublet
Overlap gene	Cyyr1, LOC100039994, LOC622000
Upstream gene	LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
Downstream gene	Adamts1, Adamts5, LOC100040025, LOC100039780
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039893 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039893
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100039634 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039634
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Mrpl39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27393 MGI:1351620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Jam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67374 MGI:1933820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp5j (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11957 MGI:107777
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	Gabpa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14390 MGI:95610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm311 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224402 MGI:2685157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	App (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11820 MGI:88059
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyyr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224405 MGI:2152187
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039994 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039994
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 95 ESTs, 6 Proteins

name	LOC622000 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622000
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 107 ESTs, 9 Proteins pseudo : _no_value

name	Adamts1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11504 MGI:109249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adamts5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23794 MGI:1346321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040025 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	LOC100039780 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Mrpl39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560437 GeneID:27393 MGI:1351620
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L39 transcript_id : NM_017404.2

name	Jam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352774 GeneID:67374 MGI:1933820
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : junction adhesion molecule 2 transcript_id : NM_023844.3

name	Atp5j (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980637 GeneID:11957 MGI:107777
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F transcript_id : NM_016755.2

name	LOC100039950 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268122 GeneID:100039950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : hypothetical protein LOC100039950 transcript_id : XM_001473834.1

name	Gabpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328118 GeneID:14390 MGI:95610
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GA repeat binding protein, alpha transcript_id : NM_008065.2

name	Gm311 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268124 GeneID:224402 MGI:2685157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : gene model 311, (NCBI) transcript_id : XM_001473851.1

name	App (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47271503 GeneID:11820 MGI:88059
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta (A4) precursor protein transcript_id : NM_007471.2

name	Cyyr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130051 GeneID:224405 MGI:2152187
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine and tyrosine-rich protein 1 transcript_id : NM_144853.3

name	LOC100039994 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268127 GeneID:100039994
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 95 ESTs, 6 Proteins product : similar to DnaJ (Hsp40) homolog, subfamily B, member 6 transcript_id : XM_001473910.1

name	Adamts1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47087139 GeneID:11504 MGI:109249
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 transcript_id : NM_009621.3

name	Adamts5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125490360 GeneID:23794 MGI:1346321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) transcript_id : NM_011782.2

name	LOC100040025 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268132 GeneID:100040025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Ubtf protein transcript_id : XM_001473966.1

name	LOC100039780 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268115 GeneID:100039780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039780 transcript_id : XM_001473139.1

name	Mrpl39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560438 GeneID:27393 MGI:1351620
definition	GO_component : GO:0005762 - mitochondrial large ribosomal subunit [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence ISS] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0000002 - mitochondrial genome maintenance [Evidence TAS]; GO:0006412 - protein biosynthesis [Evidence ISS] codon_start : 1 note : ribosomal protein, mitochondrial, L5 product : mitochondrial ribosomal protein L39 protein_id : NP_059100.2

name	Jam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543010 GeneID:67374 MGI:1933820
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : junction adhesion molecule B; junction cell adhesion molecule 2 product : junction adhesion molecule 2 protein_id : NP_076333.2

name	Atp5j (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949005 CCDS:CCDS28283.1 GeneID:11957 MGI:107777
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA] GO_process : GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : mitochondrial ATP synthase coupling factor 6; ATP synthase coupling factor VI product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F protein_id : NP_058035.1

name	LOC100039950 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268123 GeneID:100039950
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473884.1

name	Gabpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328119 CCDS:CCDS28284.1 GeneID:14390 MGI:95610
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : GA-binding protein alpha-subunit product : GA repeat binding protein, alpha protein_id : NP_032091.2

name	Gm311 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268125 GeneID:224402 MGI:2685157
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein D-like protein_id : XP_001473901.1

name	App (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47271504 CCDS:CCDS28285.1 GeneID:11820 MGI:88059
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0030424 - axon [Evidence IDA]; GO:0035253 - ciliary rootlet [Evidence IDA]; GO:0005905 - coated pit [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0016020 - membrane [Evidence TAS] [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0031594 - neuromuscular junction [Evidence IDA]; GO:0043005 - neuron projection [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0051233 - spindle midzone [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008344 - adult locomotory behavior [Evidence IMP]; GO:0006915 - apoptosis [Evidence IEA]; GO:0008088 - axon cargo transport [Evidence IMP]; GO:0016199 - axon midline choice point recognition [Evidence IMP]; GO:0007409 - axonogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0048669 - collateral sprouting in the absence of injury [Evidence IGI]; GO:0006878 - copper ion homeostasis [Evidence IMP] [Evidence IGI]; GO:0016358 - dendrite development [Evidence IMP] [Evidence IGI]; GO:0006897 - endocytosis [Evidence IEA]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence IGI]; GO:0030900 - forebrain development [Evidence IMP]; GO:0000085 - G2 phase of mitotic cell cycle [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IGI]; GO:0007617 - mating behavior [Evidence IGI]; GO:0006378 - mRNA polyadenylation [Evidence IDA]; GO:0031175 - neurite development [Evidence IDA]; GO:0016322 - neuron remodeling [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0045931 - positive regulation of progression through mitotic cell cycle [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [Evidence IGI]; GO:0050885 - regulation of balance [Evidence IGI]; GO:0040014 - regulation of body size [Evidence IMP]; GO:0050803 - regulation of synapse structure and function [Evidence IMP]; GO:0006445 - regulation of translation [Evidence IDA]; GO:0051563 - smooth endoplasmic reticulum calcium ion homeostasis [Evidence IGI]; GO:0001967 - suckling behavior [Evidence IGI]; GO:0051124 - synaptic growth at neuromuscular junction [Evidence IGI]; GO:0008542 - visual learning [Evidence IMP] codon_start : 1 note : protease nexin II product : amyloid beta (A4) precursor protein protein_id : NP_031497.2

name	Cyyr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450067 CCDS:CCDS28286.1 GeneID:224405 MGI:2152187
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence NAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cysteine and tyrosine-rich protein 1 protein_id : NP_659102.1

name	LOC100039994 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268128 GeneID:100039994
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473960.1

name	Adamts1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059082 CCDS:CCDS28287.1 GeneID:11504 MGI:109249
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0031012 - extracellular matrix [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0008201 - heparin binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence ISS] [Evidence IMP] [Evidence IDA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0001822 - kidney development [Evidence IMP]; GO:0016525 - negative regulation of angiogenesis [Evidence ISS]; GO:0001542 - ovulation (sensu Mammalia) [Evidence IMP]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 protein_id : NP_033751.2

name	Adamts5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125490361 CCDS:CCDS28288.1 GeneID:23794 MGI:1346321
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : implantin product : a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) protein_id : NP_035912.2

name	LOC100040025 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268133 GeneID:100040025
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474016.1

name	LOC100039780 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268116 GeneID:100039780
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473189.1

name	LOC100039893 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039893
definition	number : 2 pseudo : _no_value

name	LOC100039893 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039893
definition	number : 1 pseudo : _no_value

name	LOC100039634 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039634
definition	number : 1 pseudo : _no_value

name	LOC100039634 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039634
definition	number : 2 pseudo : _no_value

name	LOC622000 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268131 GeneID:622000
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 107 ESTs, 9 Proteins product : similar to Acidic ribosomal phosphoprotein P0 pseudo : _no_value transcript_id : XR_031460.1

clone name	MSMg01-322E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059N03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-338P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324F06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-416C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074A14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-397G06.T7 (MSMg01no397_g06.b1)	MSMg01-397G06.TJ (MSMg01no397_g06.g1)
ACC	AG497742	AG497743
length	790	770
length of high quality (start - end)	249 (74 - 322)	333 (74 - 406)
definition	CHROMAT_FILE: MSMg01no397_g06.b1 PHD_FILE: MSMg01no397_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:48 2005	CHROMAT_FILE: MSMg01no397_g06.g1 PHD_FILE: MSMg01no397_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:49 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(85,536,415 - 85,536,663)	(85,728,116 - 85,728,448)
sequence	TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG AATTCTTCAGATTCTCCGGAGGAAAGAAAAAAAAATCACTCAGTGTGTGG AATTTTCCCCTCCTCTATATAACATTTTATCTCTCCAAATTATCGAAGTG AATAAAGACGCAGAGGCGCCCGTTGTCATAACAGTCTGTGGTGGGTGGGT CGCCTTGCTTCATTGAGGGAGAGCACTCACCAGGAAACACAGAAGTAAAC CATCCTAATCAAATCAGCGTTTCAGCTCTCGTCCCCCTCATCTAATTCTA ATTTCTCATAAACAGTGTGATCATGAAGTGATGAGTGACTCTCATACCCT TTACTGTGACAGCACCTCATTTGTATTCCATGGCCAGATAGTCTCGTAAG TCAATATCATTATTCCCATTGTGACCTGAGTTTCCTAAATAAATATTTAT CCAGATGATGCATATTAATACCTTATCTACCCACCATCTTCCAAGCTGCT CCCCCCTCCCCTTGCGTTAATGATTCCCATTTATCTGCGCGATTTATTCA TTCTACTTCATCTCTCCATCCTTTCTTGCAATTTTTTTACCCTTGTTTTT TTAATCCTCTTTTCTCTTTTTTAACCCTTAATTACCGTTTTTTTCTTTAT ATCTCCCTTTTCCCCCCCCTCTTTTTTCCCCACCTTTATTTTCTTTCTCG ATTTCTCTTTTCTTATCTCCATTTCCTATTTTTTTACCACCCTTTTATCC TCTTCCTCCCTTTCACCCTTTTTCTATCTTCTCCTTTACC	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXCTGGAACACTTCTGGTCAACAGACAAT TGTTCTTCCTCAAAGGCATACAAGCACGTATCTTCTGAGAAACTCTAGTC CCTCCACTTCCTGAGCATTTAAGGTCGCTCATCCACTATGGGAATAGTTT TCTGTTCTCCACCTGGTTCACTGTGGATTCTATGTGTAGGGATCTAGGGA GCCTTTATCTGAAGAGTCTACTACGTATCTTTTTGATAATTCCTCCTTTG ACACAAAGAGGTGGTCTATTTTTTTTAATCATATAGGACAATTTTTAATG TTTTCTTAGTAGTATCTATAAATTCAACAGCAAATACATTCTAAGGATTT ACTCTTACAAAATTGTATACTCCCTTCTATTGTGTTTTGATAAATCCATC TCCCTCTTTTCCCATGTCTTTTATTAGTCTCCCTACACATTGTTGCCTTC CCTTTTTCTAACTCTTCTTAGAATATCAGACCTCTTCTTTCTATTAACAC GTGTCAGGTTCGCGGTTACACCTTTTTCACTCCTTCCCACATCTACTTTC CCCTCTTCTCTTTCCTTTTCTATCTCCGCTTCTTGCATCCTGTTTTTTTT TTTTTTATTCATCCCTCTTTTTCCTTCTCTTCTTTTTTCCCCTCTATCTT ATCCTCTCTTTTATTTCCTGTTTCTTAATTTCCCTCCTCTACCTCCTATT TCTTTTTGTTCTCTCGTATC
quality values	Open. Hide. 8 8 8 8 8 8 10 16 17 12 11 11 11 11 19 14 12 11 11 9 10 10 8 8 8 10 13 8 8 8 19 16 12 12 12 10 11 11 11 11 10 10 15 16 19 21 28 32 41 35 30 35 35 31 31 26 22 12 10 9 9 11 6 6 6 6 6 8 8 10 15 15 14 15 15 32 32 35 35 35 35 34 28 25 25 33 33 34 43 43 43 39 39 43 47 47 39 39 35 35 35 42 42 42 48 57 57 57 57 57 46 48 48 57 48 54 54 54 54 54 54 54 50 50 57 57 68 68 68 68 68 57 57 57 57 39 39 39 57 57 57 44 44 28 25 27 32 32 18 24 24 36 32 32 23 25 23 27 27 32 30 43 32 36 50 50 57 54 54 54 59 57 57 57 57 52 52 50 50 43 43 42 43 43 52 52 50 43 43 38 38 43 43 52 43 43 42 31 31 44 43 43 52 43 57 43 41 41 57 57 52 52 52 57 59 43 43 31 31 31 42 42 52 52 43 44 43 35 35 43 44 35 35 35 43 36 39 31 35 35 35 35 35 31 35 35 44 44 35 35 35 43 43 57 57 43 35 33 33 43 43 52 52 43 43 33 23 23 33 38 44 43 35 33 43 43 52 57 57 52 52 52 57 57 57 57 57 57 52 43 43 37 39 39 50 50 57 54 54 54 59 59 59 68 59 59 57 50 50 41 35 35 37 43 43 43 33 33 28 32 24 15 12 12 12 12 11 15 15 31 20 27 24 18 20 19 23 37 44 57 57 48 48 48 48 57 57 57 47 47 47 57 57 34 26 12 11 11 16 18 19 22 30 19 23 31 34 37 43 43 43 43 48 48 48 59 42 42 28 24 20 15 11 11 11 11 15 21 28 22 21 16 19 15 10 11 14 13 11 9 12 12 12 12 15 12 11 11 20 16 17 16 19 10 10 10 10 10 13 13 13 11 11 10 10 10 10 15 10 10 8 9 8 8 8 13 12 18 12 10 10 8 8 8 17 20 30 32 25 21 21 12 10 9 9 9 8 8 8 8 8 10 8 10 8 8 8 8 10 10 10 22 15 10 8 8 10 8 8 10 10 10 10 11 12 9 11 8 8 8 8 8 8 9 10 9 9 9 10 10 13 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 6 8 6 6 8 8 8 8 6 6 8 8 8 8 8 8 8 6 6 8 8 8 8 15 9 8 8 6 6 6 6 10 13 10 10 9 10 10 8 6 6 6 6 10 8 8 8 8 8 10 13 15 8 10 8 8 6 6 8 8 6 6 8 8 10 8 12 8 8 8 8 9 8 8 8 8 8 8 10 11 18 13 10 10 8 13 12 11 8 10 8 10 7 6 6 8 9 10 12 10 12 12 14 14 14 13 10 11 8 8 8 8 11 12 10 8 10 8 8 11 13 10 10 8 8 8 8 6 10 6 6 6 6 10 12 19 19 23 19 13 10 14 9 9 8 11 15 10 10 8 10 10 15 13 12 19 15 15 12 24 12 12 12 11 11 8 8 6 6 10 10 8 8 8 8 6 6 10 8 8 9 10 15 10 15 16 21 17 10 8 8 8 9 9 10 10 18 10 10 8 8 8 8 15 8 8 6 6 8 15 22 23 19 17 22 12 8 8 6 6 11 10 13 8 9 10 10 8 8 8 12 12 14 14 10 11 8 6 6 6 7 10 15 10 10 8 8 8 13 15 14 11 8 11 8 8 8 8 10 10 13 8 8 8 13 11 10 10 10 10	Open. Hide. 6 6 8 8 10 9 8 8 7 7 6 6 8 12 12 39 37 43 39 39 35 36 32 32 29 32 37 23 25 11 6 6 6 6 7 8 10 8 10 10 20 18 29 30 37 26 26 11 11 11 26 26 50 42 41 25 25 9 9 8 8 8 13 13 12 12 18 15 22 32 32 47 36 57 57 57 57 38 42 50 42 47 47 57 57 59 59 48 48 42 48 47 54 54 54 54 54 54 54 54 59 68 68 68 68 68 68 54 50 47 47 47 47 42 44 37 37 37 43 48 54 54 54 57 59 54 54 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 57 59 48 44 43 43 39 37 37 44 48 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 48 48 48 48 59 59 59 68 68 68 68 68 68 68 57 50 50 50 48 48 48 48 48 57 59 59 57 57 48 39 39 33 31 24 24 30 34 34 36 25 27 12 12 12 16 17 19 15 19 25 27 34 35 34 28 23 23 34 34 43 43 43 37 37 36 43 37 37 37 40 39 43 39 39 35 29 29 29 29 37 40 40 42 29 24 15 13 14 14 14 24 29 32 40 36 30 26 28 28 37 32 23 15 15 28 28 43 28 28 14 15 15 32 28 36 37 37 37 37 32 32 30 30 30 37 30 32 32 36 36 31 32 10 10 8 8 8 13 11 12 18 12 14 11 18 16 21 15 15 20 16 17 11 13 8 10 8 8 8 9 16 13 13 12 13 10 9 9 15 16 9 9 9 14 10 8 8 8 8 10 15 26 37 37 22 15 8 6 6 10 10 14 12 13 8 8 8 15 22 9 9 12 11 9 8 8 8 8 8 6 6 8 6 6 8 8 9 9 8 8 8 8 8 8 10 11 8 8 8 8 9 10 10 10 10 8 10 10 10 10 11 11 23 18 21 12 10 10 10 10 8 8 8 8 8 8 8 9 8 8 8 10 10 6 6 8 10 10 15 10 13 13 10 8 8 6 6 8 10 10 12 8 8 8 8 9 10 11 21 15 15 15 10 9 9 9 9 9 8 10 8 8 11 8 8 6 6 8 10 15 11 9 9 7 8 8 8 8 10 10 10 8 6 6 8 8 8 8 10 8 10 10 10 15 15 13 8 12 8 8 8 8 8 8 8 8 10 10 8 8 8 10 8 10 8 8 8 10 11 12 10 9 9 8 8 8 8 8 8 8 8 8 13 19 28 34 37 39 32 32 32 17 17 12 10 10 8 8 6 6 10 10 10 11 10 13 12 12 10 9 9 8 8 6 7 6 6 11 15 12 14 9 10 9 10 10 10 10 15 11 10 10 6 8 8 8 10 11 11 10 12 10 11 7 6 8 8 9 8 12 9 9 13 8 10 9 10 9 9 9 9 8 8 6 6 6 6 7 7 9 9 10 11 8 10 10 14 10 10 9 9 8 11 11 8 8 8 10 13 12 12 15 15 13 9 9 8 8 8 8 8 8 9 9 10 13 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no397_g06.b1 MSMg01no397_g06.b1 CHROMAT_FILE:
MSMg01no397_g06.b1 PHD_FILE: MSMg01no397_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:48 2005
         (249 letters)



>mm_chr16_85536215_85536863
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaaaaaaatcactcagtgtgtggaattttcccctcctctatataacattttatctc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aagaaaaaaaaatcactcagtgtgtggaatttttccctcctctatataacattttatctc 260

                                                                       
Query: 61  tccaaattatcgaagtgaataaagacgcagaggcgcccgttgtcataacagtctgtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaaattatcgaagtgaataaagacgcagaggcgcccgttgtcataacagtctgtggtg 320

                                                                       
Query: 121 ggtgggtcgccttgcttcattgagggagagcactcaccaggaaacacagaagtaaaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgggtcgccttgcttcattgagggagagcactcaccaggaaacacagaagtaaaccat 380

                                                                       
Query: 181 cctaatcaaatcagcgtttcagctctcgtccccctcatctaattctaatttctcataaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaatcaaatcagcgtttcagctctcgtccccctcatctaattctaatttctcataaac 440

                    
Query: 241 agtgtgatc 249
           |||||||||
Sbjct: 441 agtgtgatc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no397_g06.g1 MSMg01no397_g06.g1 CHROMAT_FILE:
MSMg01no397_g06.g1 PHD_FILE: MSMg01no397_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:49 2005
         (333 letters)



>mm_chr16_85727916_85728648
          Length = 733

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaacacttctggtcaacagacaattgttcttcctcaaaggcatacaagcacgtatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctggaacacttctggtcaacagacaattgttcttcctcaaaggcatacaagcacgtatct 474

                                                                       
Query: 61  tctgagaaactctagtccctccacttcctgagcatttaaggtcgctcatccactatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tctgagaaactctagtccctccacttcctgagcatttaaggtcgctcatccactatggga 414

                                                                       
Query: 121 atagttttctgttctccacctggttcactgtggattctatgtgtagggatctagggagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atagttttctgttctccacctggttcactgtggattctatgtgtagggatctagggagcc 354

                                                                       
Query: 181 tttatctgaagagtctactacgtatctttttgataattcctcctttgacacaaagaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tttatctgaagagtctactacgtatctttttgataattcctcctttgacacaaagaggtg 294

                                                                       
Query: 241 gtctattttttttaatcatataggacaatttttaatgttttcttagtagtatctataaat 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtctatagtttttaatcatataggacaatttttaatgttttcttagtagtatctataaat 234

                                            
Query: 301 tcaacagcaaatacattctaaggatttactctt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tcaacagcaaatacattctaaggatttactctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information