BAC Information

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BAC

Clone NameMSMg01-397L12
Chromosome16 (Build37)
Map Location 53,877,658 - 53,878,076
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397L12.T7 (MSMg01no397_l12.b1)MSMg01-397L12.TJ (MSMg01no397_l12.g1)
ACCAG497992AG497993
length820772
length of high quality
(start - end)
176 (65 - 240)419 (72 - 490)
definitionCHROMAT_FILE: MSMg01no397_l12.b1 PHD_FILE: MSMg01no397_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:14 2005CHROMAT_FILE: MSMg01no397_l12.g1 PHD_FILE: MSMg01no397_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTAAATCGTGACCTCCGCGGAATCTTT
GTTTGTCATGAACCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGCC
ACCTTCTTGAGCCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTCACATTAAAGCTTTTTTCCATC
CTGACCAAGTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATAGGA
AAATCTTNCAATGNATTCCACTACATAAACAAACTCAAAGACAAAAATTT
CTTGCTCCTCTCGTTGGATGCCGAACAAGCATTTGACAAGATTCTTTTTC
TCTCCCCCCCCACAAGTTTTTGTAAGATTTAGGCCTCCCTGGGCCCCTCC
CTCATCCTTGGATAAATGTCACCCTTCTTCTTTCCCTGTCGTGTTTCTTC
CCTGTTATTTTGTTTATGATTTTGCCAACTCATCTCTCTTTTCCCCTTCT
TCGCCTTTTCTCTTCCCCTCCTCCCCCTTTCCCNCCTTAACCCTTTTTTC
TTCTTGTCTTGCCACTTGCCTCTCCCCCACCTCCTCCTTTTTCTCTTTTC
TTGTGATTTCCCCCCGTCCTTCCCTCGTCCCTTCTTTATTTCTATCTACC
CCCCCTCCCTCCCTCTTTTCCTTCCCCTCTCTTTTCTCTTCCTCCCTCTT
TCCTCTCATTCCTTTTATTTCCTTCCGCCTTCCACCTCCCTCTTTCTCCC
TCTCTTTCTCCCCCTTTCTG
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTACAGCTAAATTAAATTCTAGTTGGA
TAGTAATTTTTGCTTTCCTGACAAACTAGGCAATGTCCCACTTTCAAACT
AATCATTTTCCTCCTAGTATCCTTTTAAATAAAATGGACCAAAATTGCCA
AATATAATGTACTGGCAAACAGCATTTAACTGTGGACATTTCATTAGTAT
TGTTTCCTTGTTTTTATTGTTTACTTAAAAAATAAATCTTGAAACAGATG
ACTTTTATGCCATTTGATTTATTAATATCAGTTTTGTTTTCATTTATATT
ACATTCAGAAAGTCTTTTTCAATAAAACTCCACATTTTTCTTTAAAATGC
TTTATTTAAAATTAAATTTATACTAGAAGTGACATATCACATACATTAAC
ATGTACATACTACTCATATTTTCTATAAATACAAGACTTTCAAGTAAAGA
CTTATTATATATATATATTATATATATATACCCACCTAATAACTGTTTAA
AACCTCTCCATTGNNAAATTTTAAATAAATATTATATAAATAACTCCCAT
GCTATAAATTTGAACCGAATTTGCAGAAAATTATTGTTTCCCTCCTACAA
AAAAAAAATTAAAAATTGGTACCCTTTTTTCCCCCAAAAGGGACCCATTT
TTAACCTTTTTTTCCCCCACCCTGACCCTTTTTCCTCACACCATTTTTTT
GCGTTTCTTCTTGACCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_l12.g1 MSMg01no397_l12.g1 CHROMAT_FILE:
MSMg01no397_l12.g1 PHD_FILE: MSMg01no397_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:14 2005
         (419 letters)



>mm_chr16_53877458_53878276
          Length = 819

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttacagctaaattaaattctagttggatagtaatttttgctttcctgacaaactaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttacagctaaattaaattctagttggatagtaatttttgctttcctgacaaactaggc 260

                                                                       
Query: 61  aatgtcccactttcaaactaatcattttcctcctagtatccttttaaataaaatggacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtcccactttcaaactaatcattttcctcctagtatccttttaaataaaatggacca 320

                                                                       
Query: 121 aaattgccaaatataatgtactggcaaacagcatttaactgtggacatttcattagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgccaaatataatgtactggcaaacagcatttaactgtggacatttcattagtatt 380

                                                                       
Query: 181 gtttccttgtttttattgtttacttaaaaaataaatcttgaaacagatgacttttatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttccttgtttttattgtttacttaaaaaataaatcttgaaacagatgacttttatgcc 440

                                                                       
Query: 241 atttgatttattaatatcagttttgttttcatttatattacattcagaaagtctttttca 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgaaatattaatatcagttttgttttcatttatattacattcagaaagtctttttca 500

                                                                       
Query: 301 ataaaactccacatttttctttaaaatgctttatttaaaattaaatttatactagaagtg 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaaactccaaatttttctttaaaatgctttatttaaaattaaatttatactagaagtg 560

                                                                      
Query: 361 acatatcacatacattaacatgtacatactactcatattttctataaatacaagacttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatatcacatacattaacatgtacatactactcatattttctataaatacaagacttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)