BAC Information

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BAC

Clone NameMSMg01-397N03
Chromosome16 (Build37)
Map Location 41,742,487 - 41,742,750
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N03.T7 (MSMg01no397_n03.b1)MSMg01-397N03.TJ (MSMg01no397_n03.g1)
ACCAG498070AG498071
length775848
length of high quality
(start - end)
275 (41 - 315)244 (70 - 313)
definitionCHROMAT_FILE: MSMg01no397_n03.b1 PHD_FILE: MSMg01no397_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:22 2005CHROMAT_FILE: MSMg01no397_n03.g1 PHD_FILE: MSMg01no397_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCTTTTCTTCTCCGTTACTGTGTCCTTGCCTTTTATTGTGAAGAAAACAA
ACAAAACAAAACAAAACAAAACAGTGAAATTGAAAACAAGGTAGTTTAGC
CTTTATGCTATACACTATTGGACTAGAAATGAATCCCTTACGTCACCTTC
TGACAAGTATAAATTGGGTCCTTTTGGGTTTGTGCATTTTAAGGACAATA
CACAGTCTATTTAAAATAATAAATATTTTCAAACATGAAATTCTGAATGA
AATATGCCCTTAGAATTATATTGTACAATGCTTCTCTGCCCTTTGGCTAA
GATCAAGTGTAGAAATATAAAGTATATAAAAACCAGAATGATTAAAAGTG
TCTCATGTATAACCCCACTTATTCTTTATTTATCTCATGTTAGTAGTCCA
AGAGGCTACCTGCACTGAATGTTGCCTGTTGCTTTGGGATGATTCTCTCG
ATATCTTAATGACACGCCTGTCCGGTGCATACTCACTACCTGTTCTAATA
AATACAATCCCATTATTCCTGCATGTACCCTTTTTCAAAGCTTTCTTGCG
CGCGTTCCTCTATTTTTTGTTTGCGTATATTTCCCTCCACTTACTGTCCA
CTCCCCCTTAACTTTTCTTTTCCCTTTTCTCTTTACCCCCTTCATTCTTA
CTTATTCTTCCCCATTCCCTTTAATATTCCCCTTTCCCATTTTCCTCTAC
CATTTATCTTCTATTATCTCTCTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGCTGTAGGGAGCTGGAGAGATGGCTCAGAT
GGTTAAGAGTAATGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGC
ACTTACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCTTCTTC
TGGTGTGTCCAAACAAATTAATCTTTGAAAGAAAGAAAGAAAGAAAGAAA
GGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAGGAGAAGGAAGAAAGAAGG
AGAAGGAAGAAAGAGATTTTTATAAGGAATAAAGAGATAAAGAGAACGAA
GATACATTTTCCTATCTTTTTCTATCCTTTTATTCCCTCTTTTCACTTCT
CTTTTTTCTCCTTCTCCCCCCCTTTTTTCTTCTTCTTCTTCCTCTTTCCC
CTTCATCCATTTTTTCTCTTTTTCCCTCCTTTCCTTTTTCCTCCCCTCTC
TCTTCTTTTTTTCTTTTTGCCCTCTCTTTCCTTCTCCTTACTTCCTCTTC
CTTTTTCTCCCTCTTTTCCTCCCCTTCCCTTTATCCTTCACTTTTTCTTT
ACTTATCTCCCTCTTAATCTTACCCTTTTTTCGCACTACTCTTCCTCACC
CTCTCTTTTTCTACTTTCTTTCTCCTACCCCATTCTCTTTTCCTCTATCT
CTTCCCTATACCCCCTTCCTTATTGTTCCTTTTCCTCATTTTTCCTTTCC
TTTTCTTTTATACTTTCTCCCCATCTTCCGTCTTTTCCTACACCTCCCGA
TTTACTTTCACTCTTCTCCATTTTTCTTTACCCCCTTTATTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n03.b1 MSMg01no397_n03.b1 CHROMAT_FILE:
MSMg01no397_n03.b1 PHD_FILE: MSMg01no397_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:22 2005
         (275 letters)



>mm_chr16_41742276_41742950
          Length = 675

 Score =  480 bits (248), Expect = e-140
 Identities = 262/270 (97%), Gaps = 6/270 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttttcttctccgttactgtgtccttgccttttattgtgaagaaaacaaacaaa 65
           ||||||||||||||||| |||||||||||||||||||||||||||||      |||||||
Sbjct: 212 ggaattcttttcttctcggttactgtgtccttgccttttattgtgaa------aaacaaa 265

                                                                       
Query: 66  acaaaacaaaacaaaacagtgaaattgaaaacaaggtagtttagcctttatgctatacac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 acaaaacaaaacaaaacagtgaaattgaaaacaaggtagtttagcctttatactatacac 325

                                                                       
Query: 126 tattggactagaaatgaatcccttacgtcaccttctgacaagtataaattgggtcctttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tattggactagaaatgaatcccttacgtcaccttctgacaagtataaattgggtcctttt 385

                                                                       
Query: 186 gggtttgtgcattttaaggacaatacacagtctatttaaaataataaatattttcaaaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggtttgtgcattttaaggacaatacacagtctatttaaaataataaatattttcaaaca 445

                                         
Query: 246 tgaaattctgaatgaaatatgcccttagaa 275
           ||||||||||||||||||||||||||||||
Sbjct: 446 tgaaattctgaatgaaatatgcccttagaa 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)