Query= MSMg01no398_m21.b1 MSMg01no398_m21.b1 CHROMAT_FILE:
MSMg01no398_m21.b1 PHD_FILE: MSMg01no398_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:39 2005
(239 letters)
>mm_chr16_11102532_11103170
Length = 639
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1 aataagtttagaagcacacatgtaaagctcttcatgaaagaacataaataaagttgtatt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aataagtttagaagcacacatttaaagctcttcatgaaagaacataaataaagttgtatt 380
Query: 61 tgaaagggaatccagtaatccctgaaatgaaggcagcatttaattcttcagctgaagggc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaaagggaacccagtaatccctgaaatgaaggcagcatttaattcttcagctgaagggc 320
Query: 121 tactttgggatcatgaaagattgttttttgttttgattgcttatattctgttatgccacc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tattttgggatcatgaaagattgttttttgttttgattgcttatattctgttatgccacc 260
Query: 181 ttagtaagtcatttattttaaactgctttttcatttgcagtttttcagaaggaaaagcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttagtaagtcatttattttaaactgctttttcatttgcagtttttcagaaggaaaagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no398_m21.g1 MSMg01no398_m21.g1 CHROMAT_FILE:
MSMg01no398_m21.g1 PHD_FILE: MSMg01no398_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:39 2005
(444 letters)
>mm_chr16_10945301_10946144
Length = 844
Score = 741 bits (383), Expect = 0.0
Identities = 415/429 (96%), Gaps = 8/429 (1%)
Strand = Plus / Plus
Query: 6 ctcagtacccagcagagaatggaaagcttgaatgaatgaatgaatgaatgaatgaatgaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctcagtacccagcagagaatggaaagcttgaatgaatgaatgaatgaatgaatgaatgaa 269
Query: 66 tgaatgaacaaattctaatcaaattatatgtcccaccaattccatcttcctgaaaaccac 125
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 t-aa---acaaattctaatcaaattatatgtcccaccaattccatcttcctgaaaaccac 325
Query: 126 caatagctgtcatcaccacagacagaggccttgagattccagggacctgtgccaggactc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caatagctgtcatcaccacagacagaggccttgagattccagggacctgtgccaggactc 385
Query: 186 ccggcttgttagcagaaagccagaagccctgtctcaaaaaaagaaagaaagaaaatatat 245
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 386 ccggtttgttagcagaaagccagaagccctgtctcaaaaaaagaaagaaa----ataaat 441
Query: 246 tttctgctgatttgaaacacagcctagcatgtagcccaggatggtcttgaatccttcagc 305
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 442 tttctgctgatttgaaacacggcctagcatgtagcccaggatggtcttgaatcctttagc 501
Query: 306 cttctaagtttgggattacagatatccatcactacacccagctattgtgttttcttgatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 cttctaagtttgggattacagatatccatcactacacccagctattgtgttttcttggtt 561
Query: 366 ggttttgtggttttgtatgccaagggagtgggtttgttggggacaaaacccagggcctca 425
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggttttgtggttttgtatgccaggggagtgggtttgttggggacaaaacccagggcctca 621
Query: 426 tgcctgtca 434
|||||||||
Sbjct: 622 tgcctgtca 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
