BAC Information

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BAC

Clone NameMSMg01-399C16
Chromosome16 (Build37)
Map Location 33,934,830 - 33,934,966
singlet/doubletsinglet
Overlap geneItgb5
Upstream geneLrch3, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13
Downstream geneUmps, Kalrn, LOC100043670, Ropn1, Ccdc14, Mylk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399C16.T7 (MSMg01no399_c16.b1)MSMg01-399C16.TJ (MSMg01no399_c16.g1)
ACCAG499095AG499096
length739770
length of high quality
(start - end)
137 (72 - 208)---
definitionCHROMAT_FILE: MSMg01no399_c16.b1 PHD_FILE: MSMg01no399_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:06 2005CHROMAT_FILE: MSMg01no399_c16.g1 PHD_FILE: MSMg01no399_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANGAATACGCGGAAT
TCCCAAACTTTGCCTGAGAGGGCTGGCAGCCAAGTCTCCCTGCCTCTTTC
TACTAAACAGAATATTGGCTATTCAGAGGCCTGGGCTAGAGTTGGGGAGC
CAGTGGCCTGACAGGCAATTCGGGGCAGTGAGAGGAAGCTCAGCACTGAT
GCTTCATGAACGTGGAGAAGATGGAGGGGGAGGGTATCAATGGGGTCCCA
GGACGAGGTCCAGCAGGCAGGCAGGCAAGACTGTGGGGCTGTGAGAACAG
ACATCTCCCACAGGCTAGTTGTTTCTTTACGGAAGGAAACAAGAGGATTG
CAGAGCTTTCTTCTGACACACCACGCCCGGTATACCGCTCTGGGGATAAA
TAGAGCCGTGGAAACTCCCCACTCGCAGGCATATTGGCTGAGAGAACACG
ATCCACTGCCTTAGCTGTGCCTCTGTGAGATGTCCTTGTCGTTTGCACTT
GTATATGCTCACATAGTTCCGGCAGACCGGGCTGGACCTAGTTCTCATCC
TCCCTGTGCACTGTGTCCCTGTTAGCAAGCTCCTTACTTCTGTTAACGCG
CCCCCTTTCTTGTTCCCCGATAACAACCCTGTATGTTTCCGCCCCCCTTT
TATCCCTGCCCCTCATGTTATGCAACGCCTGCGTATTGCCTTTATGGCTA
CCCCGTCCAGCCCCTGTATCCTGACTTTTTAAACTGCTT
ATGAAGCGTGTAGCCTGGCGGCCGCCTGTTTTCAAAAAAAAGGTGAACTA
TAGAAGGATTCCCGAAATTCCTCCAGTAGGGTACAGGAGCAGGCTCCACA
CTTCATAGCTTGCCAGGTAGCGCACCAAATACAGTGTATTCGGTTACTAG
TTGTGGCTTCTCCTTCCGCATTATCCGATGATTATGTCTTCCGCAGGAAG
TTTATGCTCATTTCGCCGTATCTGTCTTCGTATTCAACATTTAACCCCCC
CGTGTCCGCTCTTGCTTGCGCATGTTCTATGCCTGCCTCAGTAGCTGAGG
ACAGGAGGCGGATTCGATTTTCCTTTTTCCTGCCCCCCCTTCATTTGTTT
TACGGTCTCCCTGACTTTTGTTGTCATGCCTTTGACGTATTTCCTATTTT
CTTTCTACGAAATACTTGCTCCTCCCCTTCGCACTCTTTTGATTTTTACG
TATCCCTCTATATTATTGTATCTCTCCAGCGTTCACTGACACTTCTTTAT
TTATTGTTTCTCCTCCTCTTTTGTTCCTATTTTTTCCTTTCCGGCCCCTT
TTCCTTATTTTTGTTTTCCCTCCGTTTTCTTGATTATTATCCCGCCTTTC
CTCTATGTTCTATTTCACCACATCTTTACATTTCTAATTTTTTTCCCCCC
TTTCCTTTACCCATTTCCTCCGATCCTTTTGTTGCCCTGATTATTTTCTT
TTTGTCTTCCTCCCTCCTCTCTTGCTCCCTCTGATTTTCTCTTCCCATTT
TTATTTTTTCCTCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_c16.b1 MSMg01no399_c16.b1 CHROMAT_FILE:
MSMg01no399_c16.b1 PHD_FILE: MSMg01no399_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:06 2005
         (137 letters)



>mm_chr16_33934630_33935166
          Length = 537

 Score =  250 bits (129), Expect = 3e-71
 Identities = 135/137 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctggcagccaagtctccctgcctctttctactaaacagaatattggctattcagaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gctggcagccaagtctccctgcctctttctactaaacagaatattggctattcagaggcc 278

                                                                       
Query: 61  tgggctagagttggggagccagtggcctgacaggcaattcggggcagtgagaggaagctc 120
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 277 tggactagagttggggagccagtggcctgacaggcaatgcggggcagtgagaggaagctc 218

                            
Query: 121 agcactgatgcttcatg 137
           |||||||||||||||||
Sbjct: 217 agcactgatgcttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)