BAC Information

Click to search

BAC

Clone NameMSMg01-399F14
Chromosome16 (Build37)
Map Location 66,584,566 - 66,584,738
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F14.T7 (MSMg01no399_f14.b1)MSMg01-399F14.TJ (MSMg01no399_f14.g1)
ACCAG499233AG499234
length733842
length of high quality
(start - end)
512 (52 - 563)294 (79 - 372)
definitionCHROMAT_FILE: MSMg01no399_f14.b1 PHD_FILE: MSMg01no399_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:20 2005CHROMAT_FILE: MSMg01no399_f14.g1 PHD_FILE: MSMg01no399_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCTCCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTAGATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCGCATTCTTCTACACGATAACAACCAGTTGTCCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGCTCATTTCTGGATCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTCTATCACC
ACCGTTCTGTAGTTAAGCTTTAGGTCTGGCCTGGTGATTCCGCCCCAAGT
TCTTTTATCTTGAAAATACCTTTTGCTATCCTN
NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCAGAGAACCTGGAATTTC
TAAATGGAAATCGGATCACCTAAATATATAATCTCAGGGGTCATCCAAAT
GTGCTAAGGCTCTTCTGTTACTTCCTTTGCAGCCTGTTGCATGAGTTTTT
TTTTTTTTTTTAATCTCTTCCAATCTAAAAAGGGGGAGTTCTATCACCTA
CTGATAAGGAAAGATGACAAGAAGGCAGCAGTAAGATGGGCTGTGACAGG
GCCTATCTTTAAAGGAGAATTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACAGAGACAGATACTTCCTTTTTTTTTTT
CTCCTTTTGTTTTTTTTTCCCCCCCCCACTTTCCTATTATATTTTTTTCC
ACTCACTTTTCCTTTTTCCCCCCCTTCTCCCCTACTCTTCGCTCCCTTCT
TTTTTTATCTCCTCCCTCCGACTTAATTTTTTTCTCATCTCTACGTCTTA
CTCCTTCCCCCTCGCTCTGTTTCTTTCATTTATTCCCAACCGCTCTCCAT
TTATCTCTCCCCTTTTTTTTTTCTCCTCCTCCCCTACTTCTTTTTTTCCG
CTCTCTTCTTTTTTTCCTTTTCTCTCCGTCCTTTCCTTTTTTTCCTTTTT
TCTTCCCTCTTCTCCCCCCCTCCCCTCTTCTTTTTCCTCCCCTTTTCCGC
CGCGCTGTGTTTTCCTTACTCTCATTCTCGCCCTATTCTCTCTCGTTTTC
TCCTCCTTCCTTTTCTCCCCGTCTCTATCCTCCCTCCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f14.g1 MSMg01no399_f14.g1 CHROMAT_FILE:
MSMg01no399_f14.g1 PHD_FILE: MSMg01no399_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:20 2005
         (294 letters)



>mm_chr16_66584366_66585055
          Length = 690

 Score =  252 bits (130), Expect = 3e-71
 Identities = 164/180 (91%), Gaps = 10/180 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcagagaacctggaatttctaaatggaaatcggatcacctaaatatataatctcagg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 catgcagagaacctggaatttctaaatggaaatcggatcacctagatatataatctcagg 260

                                                                       
Query: 61  ggtcatccaaatgtgctaagg-ctcttctgttacttcctttgcagcctgttgcatgagtt 119
           |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| 
Sbjct: 261 ggtcatccaaatgtgctaggggctcttctgttacttcctttgcagcctgttccatgagtc 320

                                                                       
Query: 120 ttttttttttttttaa--tctcttccaatctaaaaagggggagttctatcacctactgat 177
           |||||||       ||  ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttt-------aaaatctatttcaatctaaaaagggggagttctatcacctactgat 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 690
Length adjustment: 9
Effective length of query: 285
Effective length of database: 681
Effective search space:   194085
Effective search space used:   194085
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)