BAC Information

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BAC

Clone NameMSMg01-399K20
Chromosome16 (Build37)
Map Location 60,991,179 - 61,144,396
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K20.T7 (MSMg01no399_k20.b1)MSMg01-399K20.TJ (MSMg01no399_k20.g1)
ACCAG499483AG499484
length686721
length of high quality
(start - end)
379 (75 - 453)114 (75 - 188)
definitionCHROMAT_FILE: MSMg01no399_k20.b1 PHD_FILE: MSMg01no399_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005CHROMAT_FILE: MSMg01no399_k20.g1 PHD_FILE: MSMg01no399_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,991,179 - 60,991,556)(61,144,283 - 61,144,396)
sequence
CGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAACCGC
GGAATTCTAAGTGTATTCCGTTACACGTGGTATGTATAGCTGGAGAAGTG
GATTCCAGTTATCGCTCCTTCCTTTAGGTCAGATTTTAAAACTGAAAATT
TCACCCATTGGCTTGCTTGATGGTATTCCACAGAGACTCTAAGGTGTTGC
TTGCCCTAGAGAGCTTTACAAAGATCAGACCTGTGCCTGCCTCTTTGCTG
TTCATGTGATATAAACACTTGTCTTTTCATTTAAAGTGGGGCTGGAGGGA
TAGCTCAGTGGTTAAGAAAATTTGGTCTCCTAGTCTGTGAAGAGCGCTGC
TAGGTATTGATGTTTCAGGGCTTTTCCTTCTTGCTTTAGATTTTATAACA
GCTTCCTGTTCATTTCCTTCACCCTTTCCATTTATAAATCTGCCCCCAAA
TTCGAAATCAGTTCCCCATTTTACATGTCTTTAACTTGCTCCAGGAATTA
TGTTTTACAATGTGCCCCAATATTCTCAGTATTTCCAGCTATTATTATAC
CAACCTGACCCATTTTAAAATAATTTCCTCTTGTTGCCCGGCCCCAATTT
GTTTACACAACTTCCCTTAAATTTTCCTTGTAATCCTAACTTATTCCTTA
ATTCCCGGGAAGAAACTTTTAATGGTCCTTGGGGTA
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGATGATAATTTCTCATTCTGAA
AATGTAAGCTGTGGAAAAGTAGAGTATGTAGTATGTATGGGAATTAAATA
ATTATTGATAAACTTCCTTTGTGGTTCTGTACTGTGAATAGCGGGCAGTA
TCAAGGTTAATAGGCAAGGACTAATAGCAAGCTGTATTGTTTTCCTCCAC
CTGTTAAAGACAATTAATAAATATAAAACGTAAGTTATAGGAATCACTTG
AAATCTGTCTTGACCTTCATAAAGTATTGAGTTCTTGAAAGAAGTATGCT
AATCTAGCTAAGGTAATGAAAATATACTTGATCCTACTGCGCAAATAATC
TTGTGTATTAAAATATTGTTAAAATACCCGCACAGCAGTCCCAATTTCTT
GACCCTAATCTTTTTACCTCCTGCTTTAGCAACATCACGTTATTACCTTC
CTCGTTTTTCTAATCCCCCCGAATAATTTTTTGGCACTATCTTGAATGTT
TCTATTTGCCCCCCTTTTAATAGGTTAATGAATCCGCCTGTTTAGTTTCG
CTTACCCCGGGATGCTTTTTTCAACTAGTATTTTTCTCTTTCGAAATCCC
CCCCGCCTTCAGGGTCTTCCCAATTCCCTTATTCACTTCAATCCTTAATT
TTATTTTCTCCTCCCGCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k20.b1 MSMg01no399_k20.b1 CHROMAT_FILE:
MSMg01no399_k20.b1 PHD_FILE: MSMg01no399_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (379 letters)



>mm_chr16_60990979_60991757
          Length = 779

 Score =  638 bits (330), Expect = 0.0
 Identities = 366/378 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtggtatgtatagctggagaagtggattccagttatcgctccttcctttaggtcagat 60
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgtggtatgtgtggctggagaagtggattccagttatcgctccttcctttaggtcagat 260

                                                                       
Query: 61  tttaaaactgaaaatttcacccattggcttgcttgatggtattccacagagactctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaactgaaaatttcacccattggcttgcttgatggtattccacagagactctaagg 320

                                                                       
Query: 121 tgttgcttgccctagagagctttacaaagatcagacctgtgcctgcctctttgctgttca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgttgcttgccctagagagcgttacaaagatcagacctgtgcctgcctccttgctgttca 380

                                                                       
Query: 181 tgtgatataaacacttgtcttttcatttaaagtggggctggagggatagctcagtggtta 240
           ||||||| ||||| ||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 381 tgtgatacaaacagttgtcttttcagttaaagtggggttggaaggatagctcagtggtta 440

                                                                       
Query: 241 agaaaatttggtctcctagtctgtgaagagcgctgctaggtattgatgtttcagggcttt 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 agaaaatttggtctcctagtctgtgaagagcgttgctaggtattgatgtttcagggcttt 500

                                                                       
Query: 301 tccttcttgctttagattttataacagcttcctgttcatttccttcaccctttccattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tccttcttgctttagattttataacagcttcctgttcatttccttcatcctttccattta 560

                             
Query: 361 taaatctgcccccaaatt 378
           |||||||| |||||||||
Sbjct: 561 taaatctgtccccaaatt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no399_k20.g1 MSMg01no399_k20.g1 CHROMAT_FILE:
MSMg01no399_k20.g1 PHD_FILE: MSMg01no399_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (114 letters)



>mm_chr16_61144083_61144596
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagatgataatttctcattctgaaaatgtaagctgtggaaaagtagagtatgtagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttcagatgataatttctcattctgaaaatgtaagctgtggaaaagtagagtatgtagtat 255

                                                                 
Query: 61  gtatgggaattaaataattattgataaacttcctttgtggttctgtactgtgaa 114
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtaagggaattaaataattattgataaacttcctttgtggttctgtactgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)