BAC Information

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BAC

Clone NameMSMg01-400I21
Chromosome16 (Build37)
Map Location 17,308,104 - 17,308,348
singlet/doubletsinglet
Overlap genePik4ca
Upstream geneYars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e
Downstream geneSerpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I21.T7 (MSMg01no400_i21.b1)MSMg01-400I21.TJ (MSMg01no400_i21.g1)
ACCAG500150AG500151
length774776
length of high quality
(start - end)
245 (80 - 324)444 (76 - 519)
definitionCHROMAT_FILE: MSMg01no400_i21.b1 PHD_FILE: MSMg01no400_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:54 2005CHROMAT_FILE: MSMg01no400_i21.g1 PHD_FILE: MSMg01no400_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCTCTATAATTTGCGGGCGCTATACGAATCACTATATTCAGACACAC
CGCGGAATTCCAGGTTATTACGATATCTAAGCAAATATTCACTTAGAAAT
GAACCCAGAATTCCATGGGCCTTGTGCCTGTTACCTTTGCTGCTAATGAG
CATTGCCGTCAATTTGAACATGGCTTGTGTATAGTGCTGAGGATGACTGT
GGTCCAAAGCTGTGATCAGATCTTGGACCATCATTTTGTTCAGGTCAGAC
ATCTGGCCTGTGGCACCTGAGAACCGAATCATTCCATGTACCTGTGAAGA
AGTACGCTTATTAGCAGCTGTGCACTTATTTTGGCCCCCGAGTGAGACCC
TGGCTACCAGCTCACTCAGCTCACAATAGGACTGGCTAGACTAGAGCTCA
TCTCAGTGGTGCCGTCATTGAGCACAGTTCCAGGAAATATATGGTGGCAT
TTTCACCAACAATGATTCTTGAGGATGGAGACATAGTCTCATCAGTGTAC
ATAGTGTTAAGCTAGAACAAGGTTTGTGAATATAAGCTAGATAAATAAAC
TTCCTTCACAGTCAATTAATGACTCANACAACAAAACTGCTTCACTATCT
TTTCATATATAATTTTTTTTTTTTTGCAAAAGCGTTACCTTCTTATTCTT
ATACCAAAGGTATCCCTGAGAATTGACCTTTTTCCCCAAACTAAACCCAG
GTCCTTATAGCTAATTTCTCCTCTCCCCCGAATCTTCCCCAATGACTTAG
AATAAAATTCTCCCCTCCCCTCCN
NNNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCAGAAATTCAGGACCTCTGGAAGAGCAGCCAGTG
CTCTTAACTGCTGGGTCATCTCTCCAGCCCTTTATATATAAATATTTAAA
AATGACTTTATGTATGTAGATGTTTTGCCTGCATGCATATCTGGGCACCA
TGTGTGTGCCTGGTACCCACGGAGACCTGAAGAGGACATTAGATTTCCTA
GACATGTATTTATAAACAGTTATGAGCTGCCATGTGGGTTCCTCTAGAAG
AGGCCCTAATTTCAACAACTTCTTTTTATTTTATCTATTTATCTATCTAT
TGGTTTATTGAAACAGGGCTTCTCTGTGTAGCCCTTGGCTGTCCTCCAGC
TCGCTTTGTACTGCAAGCTGGCCTTGAACTTAGAGGTCAGCCTGTATCTC
CCTCCCAAGTGCTAGGATTAAAAGCATACACTACCACCTCTCAGCTTTCA
GCTTCTTAATATGGCTACATCAATCAGTTGGAGATCTCTTTAGCATTTAC
CGAACCCCATGTGGTTGACATCTCTGTGCACAGGGCCTGTAGCCTGTCTC
TGAGACCCCTAAGGTACTTACTTTAGGGGCCCCCGAAAGGACAGACCCCG
GGGCCCCACCCAAAATTTTGCCAAGGGGGCCCATGGGGCTTCTTCTCGGT
TTATCGTACATAGGTGCCTTAAAATGGAATCTTCCCTTTTTGAGATTTCT
TGCCTTTTCTCCATAACCCTATTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i21.b1 MSMg01no400_i21.b1 CHROMAT_FILE:
MSMg01no400_i21.b1 PHD_FILE: MSMg01no400_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:54 2005
         (245 letters)



>mm_chr16_17307904_17308548
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaaatattcacttagaaatgaacccagaattccatgggccttgtgcctgttacctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaaatattcacttagaaatgaacccagaattccatgggccttgtgcctgttacctttg 260

                                                                       
Query: 61  ctgctaatgagcattgccgtcaatttgaacatggcttgtgtatagtgctgaggatgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctaatgagcattgccgtcaatttgaacatggcttgtgtatagtgctgaggatgactg 320

                                                                       
Query: 121 tggtccaaagctgtgatcagatcttggaccatcattttgttcaggtcagacatctggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtccaaagctgtgatcagatcttggaccatcattttgttcaggtcagacatctggcct 380

                                                                       
Query: 181 gtggcacctgagaaccgaatcattccatgtacctgtgaagaagtacgcttattagcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggcacctgagaaccgaatcattccatgtacctgtgaagaagtacgcttattagcagct 440

                
Query: 241 gtgca 245
           |||||
Sbjct: 441 gtgca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)