BAC Information

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BAC

Clone NameMSMg01-400M14
Chromosome16 (Build37)
Map Location 43,707,177 - 43,707,635
singlet/doubletsinglet
Overlap genenone
Upstream geneBC002163, LOC667484, Zbtb20, LOC100043314
Downstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400M14.T7 (MSMg01no400_m14.b1)MSMg01-400M14.TJ (MSMg01no400_m14.g1)
ACCAG500325AG500326
length807831
length of high quality
(start - end)		459 (74 - 532)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no400_m14.b1 PHD_FILE: MSMg01no400_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:12 2005CHROMAT_FILE: MSMg01no400_m14.g1 PHD_FILE: MSMg01no400_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATATTTGGNGGCGCTAAACGACTCACTATATTCAGAACATCCGCGG
AATTCCAGGACTGTTACCAGATTAAAATATAACATGGAAGGTGGATCCAG
AGATGCATGGGTCCTACAGAGGGCTGCTCCTCCCACCATGGAAGAGCACC
TGCTCTCCTCTGGTGAATTTAGTTCTTTACCTCTTCTTCTGGTCACACCA
AGTCCATTCCCTGCTAGAGTTCAGACATAACAATGCTTCACCATCTCTCT
TCCAGACGCTTGCCTCCTCTTCTTCCGACTCTCCTCCACCTTTCAGTTCC
TACAACCCTTAGACCACACCAGGATTTTTTCACACGGTTCCTGGCACCTT
TTCATTTACCGCTCTCCCGCAGCTCTCTCATCTAGCTGGGCCATGGCGAG
CTACCACATACACATGCAACTGCTTCAATCCTGTGACTACCTTCATCCTT
TTCAGCTGGCAAAACCAGAACCTCACAAAAGCCTTCTTCCCTGTGCCTCC
ACTAGAGCACTGAAGTAGGACAAAGGATTGCAAACCCACAGGCCGACCTC
ACGTTATAGTCACTGTCACATAGATTGAAGCAACCCCTTATTGTTTCCCA
TAAGGCCTTCTGTTTCTCCCATTCCAAATCATGGTTTTCTTAAAAGATTC
CCACATTCCCCCCCTCCTTCAACCTTTAATAACATCCCCCTGAATCTGCC
CCCCAAGGTGCCCGAAAAAATAGAATGGGGTAAATTTTCCTCTTCTCCTT
CCACCTCAAAATCCCTTCCCATTTCTTCTTTGGGAGGTTGAGACCCCCCC
CCCGCCT

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGCCCGCATGCCCATTGCTGAAAGC
CTGGTCAACAGTATATGGTTAGGGACCTAGGCTCTCAGGGCAAAATGGAG
ACTTTTTTTGCAAACTGCTTTCTACACATTTATGCTTATACCCATATATT
AATGTTGTTCTCATTGTTGAATAGAGAAGCTTTGATTTGTAACGGGCAAC
AGTTACTGGTCAAAGTGATGAGAATAGTTGAATGCCTATCTCTGAACTGA
TCAGTGTCAGGAGACACTGTGAATTTTATTTAGCAAGAAAAGAATACAAG
AATGAGCCAGAGGGGAGGGTTGGTGTGAAATGCTGTCTTCTGGACATGAC
ATGGCTGCTGTACTCACGACCCCATAGCTACTTGCACAACATTCTTTCAT
TGGTGCGGGAGGCCTTCTCCCTGCCCCATTTTCCGAACTGCTCTTGTAAC
TACCGTCTGACTCTCCTTCCGCCCCTCTTATCTCTACTTGCATGCTCTTT
CCTATCTTTCCTTTTCCTTCTATTTCTACCTCTCTCTTTATTCTTCTCCT
TCCTTTTCATATCTCTTTTTTTTCCTCTTTTCTTTTTTTACTCTATTTTT
GTTCTCCTTTGTATTATTCTCTTTTTTTTCTTTGTTTCTTTCGTAGCTTC
CCTTATTGCTATTTCGTCTCTAATCTGCGTCTTCCTTTCCTCCCCTCTAT
CTCTTTCTTTTCTCTTCTACTTCCTCATTTACTTCGTATTGCTTATATAC
TCCTTCTTTGCTTCTCCTCCTCCTTCCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_m14.b1 MSMg01no400_m14.b1 CHROMAT_FILE:
MSMg01no400_m14.b1 PHD_FILE: MSMg01no400_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:12 2005
         (459 letters)



>mm_chr16_43706977_43707835
          Length = 859

 Score =  814 bits (421), Expect = 0.0
 Identities = 449/465 (96%), Gaps = 12/465 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatataacatggaaggtggatccagagatgcatgggtcctacagagggctgctcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatataacatggaaggtggatccagagatgcatgggtcctacagagggctgctcctcc 260

                                                                       
Query: 61  caccatggaagagcacctgctctcctctggtgaatttagttctttacctcttcttctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatggaagagcacctgctctcctctggtgaatttagttctttacctcttcttctggt 320

                                                                       
Query: 121 cacaccaagtccattccctgctagagttcagacataacaatgcttcaccatctctcttcc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cacaccaagtccattccctgctagagttcagacgtaacaatgcttcaccatctctcttcc 380

                                                                       
Query: 181 agacgcttgcctcctcttcttccgactctcctccacctttcagttcctacaacccttaga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacgtttgcctcctcttcttccgactctcctccacctttcagttcctacaacccttaga 440

                                                                       
Query: 241 ccacaccaggattttttc------acacggttcctggcaccttttcatttaccgctctcc 294
           |||||||||||      |      |||||||||||||||||||||||||||| |||||||
Sbjct: 441 ccacaccagga------cccacacacacggttcctggcaccttttcatttactgctctcc 494

                                                                       
Query: 295 cgcagctctctcatctagctgggccatggcgagctaccacatacacatgcaactgcttca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cgcagctctctcatctagctgggccatggcgagctaccacatacacatgcaactgcttca 554

                                                                       
Query: 355 atcctgtgactaccttcatccttttcagctggcaaaaccagaacctcacaaaagccttct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atcctgtgactaccttcatccttttcagctggcaaaaccagaacctcacaaaagccttct 614

                                                        
Query: 415 tccctgtgcctccactagagcactgaagtaggacaaaggattgca 459
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 tccctgtgcctccactagagcactgaagcaggacaaaggattgca 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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