BAC Information

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BAC

Clone NameMSMg01-401D07
Chromosome16 (Build37)
Map Location 20,592,159 - 20,592,526
singlet/doubletsinglet
Overlap geneBC052055
Upstream geneOlfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3
Downstream geneEG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401D07.T7 (MSMg01no401_d07.b1)MSMg01-401D07.TJ (MSMg01no401_d07.g1)
ACCAG500646AG500647
length751768
length of high quality
(start - end)
244 (334 - 577)370 (76 - 445)
definitionCHROMAT_FILE: MSMg01no401_d07.b1 PHD_FILE: MSMg01no401_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:46 2005CHROMAT_FILE: MSMg01no401_d07.g1 PHD_FILE: MSMg01no401_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACAAGC
GCGGAANNCANGAAGCTAACCAAAAAGAAAACAACCCAGCCTAAAAATGA
GCTACAGAACTAAACAGAGTTCCCAAACGGAAAAATACAAATGGCTAGTA
ACTTGAAAGTGTTCAGTTTGAGAGGTTGCAGATGGTGCAGCAGCTAAGAG
CACTTACTGCAGAGGACCCAAGTTTTAATTCCCAGCACTCACATTAGCTG
GGCATGCTTTCGCCAGTAACTCCAGCTACAGAGGATCCAGCACCTCTGGG
CGCCTCAGGCACGGGCATTCACTTGGATCNNATCCACACACAGATACACA
GGCACACAAATAATTATAAACAAAATGAATCTTTCAAAACTATGCCAAGT
ATGTTGGTGTGGTCCTTTAGTTCCAGCACTAGAGAGTCAAAGGTAGACAG
ATCTCTTTGAGCTCCTGACCAGCCTAGTCTAAACAGTCAATTCCAGGCCA
GCCAGGGCTGCATGGTGAAACTCTATCTCAGACAGACGACATGTAAACAG
ACAGAAAGACACTGGAGATGTGGAAAAACACCTGAGCGCTTGCTGTTTTT
CCAGAGGATCTGAGATGCTCAGTTCCCCGGTACCTGCTATGCAGTTCACC
TGTAACTCCAGCTCCTGTGTTTTGTTCAGGGGGTCTCTGCAACCTTAACA
GGCTGTAGAGAGAGAGGTAAGTCCCCTAAGGAAGGTATACCCTTTTTCCT
C
CCCCCCAATGAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCAAAACAATTCTCCCTTATCCTCCACGAATAAT
TGACTGTGCTCCCCCCTTGTTCCCCAGTCAGAAGCACTTAAGAGGGAGAA
TAAATGTCACTGTATCTGCTTGTCTATCTCTCCCGAAACATTGCCTCCTG
AGCTTGGGGCTGTACTTTGGTCATTTCTAGGTCATTTAACATAGAACCTG
GGATTTAGGGATCCAGTGAGTACTGGAGGGCATGGAAATCCACCCCTGTG
CTGTGTTCTGTGGTTTGCATCTTTTTTATTTGTTTATTTATTTATATACG
CATTTGATTCTTGTTCATACGACTATCAGGTAAGAAAAAAAAAAAAAAGA
AAGAATCCAACGGTGTGGAGAGTTGGATTAAACCTAACAGACAGGTAGAA
GCAAGAATAAAGTCTAGGTTCTAGCCCCAGGAATGTTCCAGAAAGAGGAA
CTAGCATTTAACTAGAAGAGTGGGAATTGGCGAAGGGAGATTAGGGGTGA
TGGTGCCACCCCCCTCGCTTTCCCCCCTTTATCTTTTTTCCCTATCCCCT
TCTCACTATCTCTTCCCCCCACCTTTCTCACTTACCCCCCCATTTATACC
CGCCCCCCCCCCTTCCCTTTCTTTTTTCTTTCCCCTTTCCTCTCCCCCTT
ACTCCTCTCTCTCCTCCCCTTATTTTCCCAATCTTCCCCACATTCTTTTT
TCCTACCTCCACCCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_d07.g1 MSMg01no401_d07.g1 CHROMAT_FILE:
MSMg01no401_d07.g1 PHD_FILE: MSMg01no401_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:46 2005
         (370 letters)



>mm_chr16_20591959_20592726
          Length = 768

 Score =  638 bits (330), Expect = 0.0
 Identities = 360/370 (97%), Gaps = 2/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcccttatcctccacgaataattgactgtgctccccccttgttccccagtcagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttctcccttatcctccacgaataattgactgtgctccccccttgttccccagtcaga-gc 259

                                                                       
Query: 61  acttaagagggagaataaatgtcactgtatctgcttgtctatctctcccgaaacattgcc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 acttaagagggagaataaatgtcactgtacctgcttgtctatctctcccgaaacattgcc 319

                                                                       
Query: 121 tcctgagcttggggctgtactttggtcatttctaggtcatttaacatagaacctgggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 320 tcctgagcttggggctgtactttggtcatttctaggtcatttaacatagaacctgggaca 379

                                                                       
Query: 181 tagggatccagtgagtactggagggcatggaaatccacccctgtgctgtgttctgtggtt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 aagggatccagtgagtactggagggcatggaaatccacccctgtgctgtgctctgtggtt 439

                                                                       
Query: 241 tgcatcttttttatttgtttatttatttatatacgcatttgattcttgttcatacgacta 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcatcctatttatttgtttatttatttatatacgcatttgattcttgttcatacgacta 499

                                                                       
Query: 301 tcaggtaagaaaaaaaaaaaaaagaaagaatccaacggtgtggagagttggattaaacct 360
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 500 tcaggtaagaaaaaaaaaaaaa-gaaagaatccaacggtgtggagagttggattaagcct 558

                     
Query: 361 aacagacagg 370
           ||||||||||
Sbjct: 559 aacagacagg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 768
Length adjustment: 9
Effective length of query: 361
Effective length of database: 759
Effective search space:   273999
Effective search space used:   273999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)